PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190601.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 319aa    MW: 35598.3 Da    PI: 9.7798
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.3e-1474118147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
   XP_019190601.1  74 RENWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 118
                      789*****************77.*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MVSVYPNLPP SPELFYYFAG DPTKTGLPAL HSNQPVTVMN TSAVPASENS DSVGLLPEDS  60
NKKVRKPYTI TKSRENWTEQ EHDKFLEALQ LFDRDWKKIE AFVGSKTVIQ IRSHAQKYFL  120
KVQKSGASEH VPPPRPKRKA SHPYPQKAPK SGPPSSLLEP GYVIRPDSLS VPANSIGNAV  180
LSPWSYSNVP GFSISHVTKD DIQLLGTAMS KNCSSSSNES TLRNWPTKRT SNQGKEKQNK  240
QIREIPDFAQ VYSFIGSVFD PNSSDHLQRL KQMDPINIET ALMLMKNLSV NLISPEFEDH  300
RRLLLSNNLG ADKLSQVLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.13e-96MYB_related family protein