PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190680.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 329aa MW: 35867.7 Da PI: 7.5493

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190680.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.7	1e-13	113	164	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r +h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ XP_019190680.1 113 QRITHIAVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 164 799*************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MALEALSTNE LFNLIIYDTF SATPALSHNE ASETTNLAAV APKQPGQDLC GGDGGGLDAC 60 SSMPAWRRRH SAGAEMITPH SRAQQNLAVQ GGGRKKRRRR PKICKNKEEA ETQRITHIAV 120 ERNRRKQMNE HLAVLRSLMP ESYVQRGDQA SIVGGAIEFV KELEHLLQSL EARKFQLLHG 180 GGGEGGGGGA TTTAAECGGA EFLPNPFSQF FSYPQYTCSP QLPNKYISKS KAAIADIEVT 240 LIETHANIRI LSIRRVRQLS KIVATFQSMC LSTLHLNVTT LDSLVLYSIS AKVEEGCQLN 300 SADEIAGAVH HMLRIIEEED TLSTCQQAV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	94	100	RKKRRRR
2	95	100	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-71	bHLH family protein