PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190767.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 709aa MW: 80274.1 Da PI: 8.247

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54	5.5e-17	74	174	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 +fY +YA+ vGF+vr s+ +k ++g++++r C++eg+++ k+ ++ ++r+r ++r+gC a+ + dg+++++++e+ XP_019190767.1 74 EFYTKYASIVGFDVRLSHLSKC-DDGTTVWRYVLCNREGHKHVVCKDkssvaeldgdaeSSVKKRRRFSNRVGCGACAIFRYGGDGTYVIHRFEE 167 6***************9998.78889999999***987777789***998889999************************* PP FAR1 84 eHnHela 90 HnH+l+ XP_019190767.1 168 RHNHSLT 174 ***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 709 aa Download sequence
MESVASYVVF YLHTMGYVLA ILITSSCTFV HTGEGDSYRL DISPGLTKYY VPLCEDSVKP 60 FVGKVFPDLD TGVEFYTKYA SIVGFDVRLS HLSKCDDGTT VWRYVLCNRE GHKHVVCKDK 120 SSVAELDGDA ESSVKKRRRF SNRVGCGACA IFRYGGDGTY VIHRFEERHN HSLTSVMSRQ 180 FLKMNRKVGP GHMKFVADCG KVNIGPVQSF RLFGEMFGGL ANVGATSLEF RNIKRDVDAF 240 SARVDAQMIT NRYDVVFTPF TGVNNHKKSI TFGAGLLTKE DIESYVWLFE KFKEAMGSEP 300 VLVVTDQDPA MRVAFPRVFK EAKHRFCMWH IMSKVGDKVG PSLSKNESFR SKLNSVVWSH 360 YLEPAEFDHQ WKVVMEEFGL LEHSWFVKMY DLRHLWIPAY FSDVSMNGLI RTTSRSESEN 420 SLFGSFTTPQ SNLVEFFMHF DRAIDSQRYS INKLNSDSEA CFPDLKTPLS MEKHVAYVYT 480 LTVFYLVQAE ICAACFSCRV LNVRDDQGIL YYDIKDENDR VFRVVLNVAE VIASCGCKLF 540 ERVGLLCRHI FVVFKDLNLN SIPLVYVVNR WTKSASLGQS FDIDGVVVDQ CRGVDEKLSD 600 IDRLKGFSQI IKDHKDMLLA DKDGCSSTVD KRSVIESICG SSVPSEVSIL PPNKAKNKGS 660 GRRIKGCKEI AIEQSKNERT CKTCNKPNHD SRNCVLRKTK DKVCGLQIL

Sequence ? help Back to Top

Protein Sequence Length: 709 aa Download sequence

MESVASYVVF YLHTMGYVLA ILITSSCTFV HTGEGDSYRL DISPGLTKYY VPLCEDSVKP  60
FVGKVFPDLD TGVEFYTKYA SIVGFDVRLS HLSKCDDGTT VWRYVLCNRE GHKHVVCKDK  120
SSVAELDGDA ESSVKKRRRF SNRVGCGACA IFRYGGDGTY VIHRFEERHN HSLTSVMSRQ  180
FLKMNRKVGP GHMKFVADCG KVNIGPVQSF RLFGEMFGGL ANVGATSLEF RNIKRDVDAF  240
SARVDAQMIT NRYDVVFTPF TGVNNHKKSI TFGAGLLTKE DIESYVWLFE KFKEAMGSEP  300
VLVVTDQDPA MRVAFPRVFK EAKHRFCMWH IMSKVGDKVG PSLSKNESFR SKLNSVVWSH  360
YLEPAEFDHQ WKVVMEEFGL LEHSWFVKMY DLRHLWIPAY FSDVSMNGLI RTTSRSESEN  420
SLFGSFTTPQ SNLVEFFMHF DRAIDSQRYS INKLNSDSEA CFPDLKTPLS MEKHVAYVYT  480
LTVFYLVQAE ICAACFSCRV LNVRDDQGIL YYDIKDENDR VFRVVLNVAE VIASCGCKLF  540
ERVGLLCRHI FVVFKDLNLN SIPLVYVVNR WTKSASLGQS FDIDGVVVDQ CRGVDEKLSD  600
IDRLKGFSQI IKDHKDMLLA DKDGCSSTVD KRSVIESICG SSVPSEVSIL PPNKAKNKGS  660
GRRIKGCKEI AIEQSKNERT CKTCNKPNHD SRNCVLRKTK DKVCGLQIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-69	FAR1 family protein