PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190833.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 289aa    MW: 32939.9 Da    PI: 6.4197
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190833.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l d+v + G g+W   +++ g++R++k+c++rw +yl
   XP_019190833.1 15 KGPWTAEEDQKLSDYVLKNGHGNWQMLPKKAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding54.52.7e-1768112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE++++++++  lG++ W++Ia++++ gRt++++k++w++ 
   XP_019190833.1  68 RGDFSQEEEQIIINLHSSLGNK-WSRIAAHLP-GRTDNEIKNFWNTN 112
                      899*******************.*********.***********986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    
MGRHPCCKDS EEVKKGPWTA EEDQKLSDYV LKNGHGNWQM LPKKAGLNRC GKSCRLRWTN  60
YLRPDIKRGD FSQEEEQIII NLHSSLGNKW SRIAAHLPGR TDNEIKNFWN TNLRKKLLRM  120
GIDPKTHQPI TDINLLLNLS HQMLSNTNNP LGSALRLQNI FQFLNSYPIL FPTNKQENFP  180
MGLDNNNTID TINNYVSATH NSSDFIGSDF NPHMKILTDA GENNGHSEYS LPSLVQSSSE  240
YIPTLDQTII PSPGGLEANN NEFLAWEEFL KNEEDCSSLW NDILQAKQT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.23e-72MYB family protein