PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190881.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

AP2

Protein Properties

Length: 386aa MW: 43224.1 Da PI: 9.4583

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190881.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.1	1.4e-15	76	135	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_019190881.1 76 SRFRGVSRHRWTGRYEAHLWDkGSWNAtqkKKgKQVYLGAYDEEESAARAYDLAAIKYWG 135 789****************999988876447***********************98 PP
2	AP2	52.4	1.3e-16	178	229	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_019190881.1 178 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 229 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MDEMKSVKSE EVLSPAGRRS LCVVNYENKC VKRRRRSPPA AIAIQPPGET SLQNAADSTT 60 PKHQNVPTTP TVKRSSRFRG VSRHRWTGRY EAHLWDKGSW NATQKKKGKQ VYLGAYDEEE 120 SAARAYDLAA IKYWGTSTFT NFPISDYGKE IEIMQNVTKE EYLASLRRRS SGFARGVSKY 180 RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYRGI NAVTNFDLST 240 YIRWLKPSGA NSLALQEDHL VSEPLQSNNT VNASDQRQSF SYNYFSTTTE TPLAAAASIP 300 QDPIVVRKPP LSPHNKPPSS PTALSLLLRS SMFRSLVEKN SNADSEENES QVGAEGDEDF 360 AFYAGDKLPG LDSLEKAGQS FWDLMS

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MDEMKSVKSE EVLSPAGRRS LCVVNYENKC VKRRRRSPPA AIAIQPPGET SLQNAADSTT  60
PKHQNVPTTP TVKRSSRFRG VSRHRWTGRY EAHLWDKGSW NATQKKKGKQ VYLGAYDEEE  120
SAARAYDLAA IKYWGTSTFT NFPISDYGKE IEIMQNVTKE EYLASLRRRS SGFARGVSKY  180
RGVARHHHNG RWEARIGRVF GNKYLYLGTY STQEEAARAY DIAAIEYRGI NAVTNFDLST  240
YIRWLKPSGA NSLALQEDHL VSEPLQSNNT VNASDQRQSF SYNYFSTTTE TPLAAAASIP  300
QDPIVVRKPP LSPHNKPPSS PTALSLLLRS SMFRSLVEKN SNADSEENES QVGAEGDEDF  360
AFYAGDKLPG LDSLEKAGQS FWDLMS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-95	AP2 family protein