PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190914.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

LSD

Protein Properties

Length: 148aa MW: 15449.2 Da PI: 8.0709

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190914.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.6	9.7e-14	31	55	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL+YP GA+sV+Ca+C +V XP_019190914.1 31 CSGCRNLLMYPVGATSVCCAVCSAV 55 **********************998 PP
2	zf-LSD1	46.5	6e-15	70	94	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+t+ XP_019190914.1 70 CGGCHTLLMYIRGATSVQCSCCHTI 94 ***********************97 PP
3	zf-LSD1	39.8	7.4e-13	108	131	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 Cg+Cr lL+Y +GA+sV+Ca+C++ XP_019190914.1 108 CGNCRMLLMYQYGARSVKCAVCNF 131 **********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence
MPVPLAPYPT APAPSPLMSP APNGAQSQLV CSGCRNLLMY PVGATSVCCA VCSAVTAVPP 60 PGTEMAQLIC GGCHTLLMYI RGATSVQCSC CHTINLALEA NQVAHVNCGN CRMLLMYQYG 120 ARSVKCAVCN FLTPVGVSPN MNEQKLKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	5e-60	LSD family protein