PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190937.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 547aa MW: 61156.9 Da PI: 6.8585

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190937.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.1	1.7e-27	305	358	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G + A+P++ile+mkv+gLt+++v+SHLQkYR++ XP_019190937.1 305 LKVDWTPELHKKFVKAVEQL-GVDAAIPSRILEVMKVEGLTRHNVASHLQKYRMH 358 5899**************.******************************96 PP
2	Myb_DNA-binding	43.5	7.4e-14	307	356	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_019190937.1 307 VDWTPELHKKFVKAVEQLGVDaaIPSRILEVMKvEGLTRHNVASHLQKYR 356 57***********************************************7 PP
3	Response_reg	29.3	4.5e-11	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + + +r+ le+ +y +v ++++ eal + +k +++ ++ ++ ++d e++k +++++ +lp i+ + +++ +++ +G XP_019190937.1 20 VLLLDEDTNSAAEMRSKLEEMNY-IVSTFQKENEALLAISNKSeaFHVAIVEVNTGNSD--EAFKFLETAK-DLPTIMTSNIHCLNTMMKCIALG 110 7999999**************.***********777778*******965..5555565555.799999998888******* PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp + ++l++ XP_019190937.1 111 AVEFLQKPLSDDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 547 aa Download sequence
MVCTANDLLD WKDFPKGLRV LLLDEDTNSA AEMRSKLEEM NYIVSTFQKE NEALLAISNK 60 SEAFHVAIVE VNTGNSDEAF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLQKPLS 120 DDKLRNIWQH VVHKAFNAGE KDVSESLKPV KESIVSMLQL ESRNSGADAQ NSSETIRENS 180 QEFSSDSDKY PAPSTPQLKQ GARSLDDCEC LDQTNFLMER DSVERDEESK SVETTCCNSG 240 SSTNPAISPP VLLVEASSIK GECKSSPDHK SRTDAPVNVS NESAAPNKPS RVNSSSGTKA 300 NKKKLKVDWT PELHKKFVKA VEQLGVDAAI PSRILEVMKV EGLTRHNVAS HLQKYRMHRR 360 QILPKDDAKR WPNPRDSAQR SCFPRDPILA FPPYHSPYSI PTDQYYPAWV QPGSYSSGVQ 420 MWGSPYHYPG WQSTDNWHWK PHPGAHANAW GCPVMPSPQG SYPTYPQNAS GYYRADGVQN 480 RYHMLEKSID FQPAEEVIDK VVKEAINKPW LPLPLGLKPP STECVLNELL KQGISTIPHK 540 INGSHTR

Sequence ? help Back to Top

Protein Sequence Length: 547 aa Download sequence

MVCTANDLLD WKDFPKGLRV LLLDEDTNSA AEMRSKLEEM NYIVSTFQKE NEALLAISNK  60
SEAFHVAIVE VNTGNSDEAF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGE KDVSESLKPV KESIVSMLQL ESRNSGADAQ NSSETIRENS  180
QEFSSDSDKY PAPSTPQLKQ GARSLDDCEC LDQTNFLMER DSVERDEESK SVETTCCNSG  240
SSTNPAISPP VLLVEASSIK GECKSSPDHK SRTDAPVNVS NESAAPNKPS RVNSSSGTKA  300
NKKKLKVDWT PELHKKFVKA VEQLGVDAAI PSRILEVMKV EGLTRHNVAS HLQKYRMHRR  360
QILPKDDAKR WPNPRDSAQR SCFPRDPILA FPPYHSPYSI PTDQYYPAWV QPGSYSSGVQ  420
MWGSPYHYPG WQSTDNWHWK PHPGAHANAW GCPVMPSPQG SYPTYPQNAS GYYRADGVQN  480
RYHMLEKSID FQPAEEVIDK VVKEAINKPW LPLPLGLKPP STECVLNELL KQGISTIPHK  540
INGSHTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-148	ARR-B family protein