PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019190939.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

ARR-B

Protein Properties

Length: 533aa MW: 59458 Da PI: 7.2579

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019190939.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.2	1.6e-27	291	344	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +++WtpeLH++Fv+aveqL G + A+P++ile+mkv+gLt+++v+SHLQkYR++ XP_019190939.1 291 LKVDWTPELHKKFVKAVEQL-GVDAAIPSRILEVMKVEGLTRHNVASHLQKYRMH 344 5899**************.******************************96 PP
2	Myb_DNA-binding	43.5	7.2e-14	293	342	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 WT+e+++++v+av+qlG + +++I + m +g+t+ ++ s++qky+ XP_019190939.1 293 VDWTPELHKKFVKAVEQLGVDaaIPSRILEVMKvEGLTRHNVASHLQKYR 342 57***********************************************7 PP
3	Response_reg	29.3	4.3e-11	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d++ + + +r+ le+ +y +v ++++ eal + +k +++ ++ ++ ++d e++k +++++ +lp i+ + +++ +++ +G XP_019190939.1 20 VLLLDEDTNSAAEMRSKLEEMNY-IVSTFQKENEALLAISNKSeaFHVAIVEVNTGNSD--EAFKFLETAK-DLPTIMTSNIHCLNTMMKCIALG 110 7999999**************.***********777778*******965..5555565555.799999998888******* PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp + ++l++ XP_019190939.1 111 AVEFLQKPLSDDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 533 aa Download sequence
MVCTANDLLD WKDFPKGLRV LLLDEDTNSA AEMRSKLEEM NYIVSTFQKE NEALLAISNK 60 SEAFHVAIVE VNTGNSDEAF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLQKPLS 120 DDKLRNIWQH VVHKAFNAGE KDVSESLKPV KESIVSMLQL ESRNSGADAQ NSSETIRENS 180 QEFSSDSDKY PAPSTPQLKQ GARSLDDSVE RDEESKSVET TCCNSGSSTN PAISPPVLLV 240 EASSIKGECK SSPDHKSRTD APVNVSNESA APNKPSRVNS SSGTKANKKK LKVDWTPELH 300 KKFVKAVEQL GVDAAIPSRI LEVMKVEGLT RHNVASHLQK YRMHRRQILP KDDAKRWPNP 360 RDSAQRSCFP RDPILAFPPY HSPYSIPTDQ YYPAWVQPGS YSSGVQMWGS PYHYPGWQST 420 DNWHWKPHPG AHANAWGCPV MPSPQGSYPT YPQNASGYYR ADGVQNRYHM LEKSIDFQPA 480 EEVIDKVVKE AINKPWLPLP LGLKPPSTEC VLNELLKQGI STIPHKINGS HTR

Sequence ? help Back to Top

Protein Sequence Length: 533 aa Download sequence

MVCTANDLLD WKDFPKGLRV LLLDEDTNSA AEMRSKLEEM NYIVSTFQKE NEALLAISNK  60
SEAFHVAIVE VNTGNSDEAF KFLETAKDLP TIMTSNIHCL NTMMKCIALG AVEFLQKPLS  120
DDKLRNIWQH VVHKAFNAGE KDVSESLKPV KESIVSMLQL ESRNSGADAQ NSSETIRENS  180
QEFSSDSDKY PAPSTPQLKQ GARSLDDSVE RDEESKSVET TCCNSGSSTN PAISPPVLLV  240
EASSIKGECK SSPDHKSRTD APVNVSNESA APNKPSRVNS SSGTKANKKK LKVDWTPELH  300
KKFVKAVEQL GVDAAIPSRI LEVMKVEGLT RHNVASHLQK YRMHRRQILP KDDAKRWPNP  360
RDSAQRSCFP RDPILAFPPY HSPYSIPTDQ YYPAWVQPGS YSSGVQMWGS PYHYPGWQST  420
DNWHWKPHPG AHANAWGCPV MPSPQGSYPT YPQNASGYYR ADGVQNRYHM LEKSIDFQPA  480
EEVIDKVVKE AINKPWLPLP LGLKPPSTEC VLNELLKQGI STIPHKINGS HTR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-144	ARR-B family protein