PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019190977.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 310aa    MW: 34498.5 Da    PI: 4.5546
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019190977.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1669.7e-21113199291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      Yn+YA++vGFsvrk k+ ++  ++++++++f Csk g++ + +     ++ +++  rtgC a+++   + +g+w vtk e+ HnHel+p
  XP_019190977.1 113 LYNDYAYRVGFSVRKGKQCYKGSTKTVKMKKFLCSKAGHKVKVHGV---KSYSKMDLRTGCGASVQFDVDGNGVWTVTKHEKGHNHELCP 199
                     7********************9*****************9998766...899999*********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    
MEEATDQAEL NMNIDQAELN MNIDEATDQA ELNIDEATDQ AELNMNIDQA ELNIVEATDQ  60
AELNIDEAKD QAELNIDEAK DQATLNIDGS SPIPVDQDLV GVSVSNVDEA YELYNDYAYR  120
VGFSVRKGKQ CYKGSTKTVK MKKFLCSKAG HKVKVHGVKS YSKMDLRTGC GASVQFDVDG  180
NGVWTVTKHE KGHNHELCPS DKSHLLRSHR RVVKNQFLCL NDLKSEVALA DDIRLLKQQS  240
EGSPSVGVAS SIWAVEMTRK FQRLIVSCQD NNVARQICEE AFENAKRRIE AEVGCVHIEE  300
FVVSSSNDIV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18960.12e-12FAR1 family protein