PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191175.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 307aa    MW: 34877.9 Da    PI: 9.7187
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191175.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.91.6e-134881890
            FAR1 18 kskkskrngeitkrtfvCskegkreeekkk............tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                    +s ++ r+++ ++++ vC++eg++++  ++             ++ +r+r+++rtgC+a++  k    + ++v+++ ++HnH+++
  XP_019191175.1  4 SSLTTARDETKIQKQIVCNREGFKHTGAQHchskptadagegPSHPKRQRVSNRTGCRARIIFKYIGAAGYQVKTFIEQHNHNMS 88
                    45556788999***************999999********99899999**********************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MRSSSLTTAR DETKIQKQIV CNREGFKHTG AQHCHSKPTA DAGEGPSHPK RQRVSNRTGC  60
RARIIFKYIG AAGYQVKTFI EQHNHNMSSV LARQFLKGNR NISSVHQKFI LDCAKANIGA  120
SKSHGLYIQI VGDCSEVGAT VVDFKNVRRD LRAYILGAYA QILVHNLIKK QEMCPAFAFD  180
YEVDEDEQMS RLFWADPMSK KNFAAFGDVV SFDATYSTNR YDLAMGMEPR IIVTNQDPAM  240
KVAIPRVFKQ ARHRYCMWHI MCKVGEKAGP TLNKNEEFKN KLNSIIWTSC LEPPDFEKRE  300
SSWKSTT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1 family protein