PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191259.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 623aa MW: 68710.7 Da PI: 6.8313

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191259.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.5	1e-12	450	496	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_019191259.1 450 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYITELQ 496 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MAMVNLSWSD EDKAMVAAVL GTKAFDYLIS SSVSAQCSLM AVGNDENLQT KLSDLVEHPN 60 ASNFSWNYAI FWQLSRSKSG ELVLGWGDGC CREPSEGEES EGTRILNLRL EDETQQRMRK 120 RAIQKLHMMF GEADEENYAF GLDRVTDTEM FFLASMYFSF PKGEGGPGKC FGSGKHFWLY 180 DALNSPIEYC VRSFLAKLAG MQTIVLIPTD VGVVELGSVR SIQESLDMLQ SIKACFSSFS 240 SLSLSRAAKQ SAPIPVIMDD RKDAFTSPMV NEHRPDGIPK IFGQDLNSGC CPPQFNKEKQ 300 HAVRKAEDRP WNAYINGNGV AFLNTPPPPR NGVHSASWPQ FSNLKPGKAV EIYSPQNQEL 360 VVNGGAARDD FRLNSFQPQK PAAAAAQMQI DFSGATSRPI VSHSSPTVES ENSDIEAAAS 420 CKEDHPGLLD EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD 480 KASLLGDAIA YITELQKKLK DLELERERVG GGSSSRETSP NSEIQNHHRV PNISIEAGKN 540 EVIVRVSCPL ETHPVSRIIQ AFKEAQIRVV ESKVAAGTDT VLHTFVVKSS GSEPLTKDKL 600 IAAFSCESSS SLQQPRLSSV VGL

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MAMVNLSWSD EDKAMVAAVL GTKAFDYLIS SSVSAQCSLM AVGNDENLQT KLSDLVEHPN  60
ASNFSWNYAI FWQLSRSKSG ELVLGWGDGC CREPSEGEES EGTRILNLRL EDETQQRMRK  120
RAIQKLHMMF GEADEENYAF GLDRVTDTEM FFLASMYFSF PKGEGGPGKC FGSGKHFWLY  180
DALNSPIEYC VRSFLAKLAG MQTIVLIPTD VGVVELGSVR SIQESLDMLQ SIKACFSSFS  240
SLSLSRAAKQ SAPIPVIMDD RKDAFTSPMV NEHRPDGIPK IFGQDLNSGC CPPQFNKEKQ  300
HAVRKAEDRP WNAYINGNGV AFLNTPPPPR NGVHSASWPQ FSNLKPGKAV EIYSPQNQEL  360
VVNGGAARDD FRLNSFQPQK PAAAAAQMQI DFSGATSRPI VSHSSPTVES ENSDIEAAAS  420
CKEDHPGLLD EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQRFYALR AVVPNISKMD  480
KASLLGDAIA YITELQKKLK DLELERERVG GGSSSRETSP NSEIQNHHRV PNISIEAGKN  540
EVIVRVSCPL ETHPVSRIIQ AFKEAQIRVV ESKVAAGTDT VLHTFVVKSS GSEPLTKDKL  600
IAAFSCESSS SLQQPRLSSV VGL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	432	440	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G01260.1	1e-180	bHLH family protein