PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191276.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 172aa    MW: 19731.6 Da    PI: 8.4836
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191276.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.97e-1014471346
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgkl 46
                    f+k rn i+K A+ +S+LC+++v +i fs  g++
  XP_019191276.1 14 FCKARNAIIKRANQISTLCATNVVIICFSICGQM 47
                    9****************************98887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    
MSESEETRFQ MEYFCKARNA IIKRANQIST LCATNVVIIC FSICGQMFVS GDESIINAFE  60
EETVVAPQCT FTCTNHKSPG FFKLKRWRNK NNNSCSSSSV SSRRKEKNGV KSPINPPVNM  120
YEFSDKLNLP QIEQLEEKMK GFKEIIAQQY LFLSAQQNVL ESSTMQKDWL KL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65070.37e-08MIKC_MADS family protein