PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191305.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YB
Protein Properties Length: 157aa    MW: 17067 Da    PI: 6.5175
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191305.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.42.1e-5828125198
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimkk+lPa +ki+kdaketvqecvsefisfvtseasdkcq+ekrkt+ngddllwa+atlGfedy++plkvyl++yre+eg
  XP_019191305.1  28 VREQDRFLPIANISRIMKKALPASGKIAKDAKETVQECVSEFISFVTSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYIDPLKVYLTRYREMEG 122
                     69********************************************************************************************* PP

           NF-YB  96 ekk 98 
                     ++k
  XP_019191305.1 123 DTK 125
                     975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    
MADGQHPASP GGGSHDSGDH SPGPRSNVRE QDRFLPIANI SRIMKKALPA SGKIAKDAKE  60
TVQECVSEFI SFVTSEASDK CQKEKRKTVN GDDLLWAMAT LGFEDYIDPL KVYLTRYREM  120
EGDTKGSAKA SDGSSRDAVP NPNSQGQHIS LPMRGME
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-71NF-YB family protein