PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191521.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 515aa MW: 59464.6 Da PI: 8.1488

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191521.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.7	2e-23	44	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY +YA vGF+vr+s+ k++ r g+i+k++ vCs+eg++e+++k+ t+k++r+r+++r+gC a+l+++++k+gk++v++++ H+H l+ XP_019191521.1 44 FYTTYAGIVGFDVRRSSDKRN-RFGQIKKKQVVCSREGFKETKNKEtieeeTTKQKRRRTTNRVGCPARLVLTLNKEGKYVVKTFVDRHTHVLC 136 9*************99998.6777*************99999999999999**********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence
MDNGGTCVMD VSPGGTHTWI PECDASLNPF EGQEFDTMED GITFYTTYAG IVGFDVRRSS 60 DKRNRFGQIK KKQVVCSREG FKETKNKETI EEETTKQKRR RTTNRVGCPA RLVLTLNKEG 120 KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG 180 GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYVEKKN DCVDMYFEYD VNEKDQLARV 240 FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES 300 YSWILRNFKN AMGSTPPIVI TDQDPAMNVA IETEFPGTRH RYCMWHIMTK VGDKVGNTLA 360 KNEEFRRALN AVVWNEESTT IGFESAWNEV IQKYGLLENR WLKRMYDERA SWVPPFFEDV 420 FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKRFESAV RKQRDKHLEL SAACTGQTPP 480 LKTLLRIERE AATVYTLTVF SDVQKEICEV GLHAG

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence

MDNGGTCVMD VSPGGTHTWI PECDASLNPF EGQEFDTMED GITFYTTYAG IVGFDVRRSS  60
DKRNRFGQIK KKQVVCSREG FKETKNKETI EEETTKQKRR RTTNRVGCPA RLVLTLNKEG  120
KYVVKTFVDR HTHVLCEEKY KRFMKVNRKI DIGHQEFITN CGKVNVGASK SFDIYAEMVG  180
GPENVGATQQ DFKNYRRELL AYMKEKDIQM VISQYVEKKN DCVDMYFEYD VNEKDQLARV  240
FWADRRARLH YGAFGDVVSF DATYKTNRYN LVFVPFTGID NHKRCVTFAA GLIDKEDVES  300
YSWILRNFKN AMGSTPPIVI TDQDPAMNVA IETEFPGTRH RYCMWHIMTK VGDKVGNTLA  360
KNEEFRRALN AVVWNEESTT IGFESAWNEV IQKYGLLENR WLKRMYDERA SWVPPFFEDV  420
FMGGLLRTTS RSEAENRIFQ SNTNKHLCLV EFFKRFESAV RKQRDKHLEL SAACTGQTPP  480
LKTLLRIERE AATVYTLTVF SDVQKEICEV GLHAG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-78	FAR1 family protein