PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191612.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 343aa MW: 38856.8 Da PI: 7.461

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.2	6.8e-09	86	110	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C f++ G C+ G+ C+FaHg XP_019191612.1 86 YKTRMCVKFME-GNCRNGEHCTFAHG 110 9********.***********8 PP
2	zf-CCCH	25.5	2.2e-08	147	169	3	25
S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 3 telCrffartGtCkyGdrCkFaH 25 +++C+ f+ + +C+yG+rC+F H XP_019191612.1 147 MKICKKFYNGEECPYGERCNFLH 169 579****66********** PP
3	zf-CCCH	40.2	5.8e-13	227	252	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + tG+C++G+rC+FaHg XP_019191612.1 227 WKTKICSKWEITGQCPFGERCHFAHG 252 8************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 343 aa Download sequence
MSFPDPPPPS QSFVSLPYSG GDMGGGFWPP LQMNQEHIEL YSQFENEPPL KRSRNSEINP 60 LVSANAQNPK VNPPNLPGKG SNHIFYKTRM CVKFMEGNCR NGEHCTFAHG AEDLREPPPN 120 WQDIVREKDK DRGAGNWNND QKVIHRMKIC KKFYNGEECP YGERCNFLHE RSPQFKNDMA 180 REQRESSAIS IGTTGSMLGR RSDSDQFEIN QHASVDSDAY RIKPTFWKTK ICSKWEITGQ 240 CPFGERCHFA HGHSELKAPA GRTEMEATTN FAPAPIKPLA PAVDPSPANA VPCAPVKEQQ 300 QQPEEGKKFL KWKPTKKICS VYADWIEDLV PPHLLCRKAE DEF

Sequence ? help Back to Top

Protein Sequence Length: 343 aa Download sequence

MSFPDPPPPS QSFVSLPYSG GDMGGGFWPP LQMNQEHIEL YSQFENEPPL KRSRNSEINP  60
LVSANAQNPK VNPPNLPGKG SNHIFYKTRM CVKFMEGNCR NGEHCTFAHG AEDLREPPPN  120
WQDIVREKDK DRGAGNWNND QKVIHRMKIC KKFYNGEECP YGERCNFLHE RSPQFKNDMA  180
REQRESSAIS IGTTGSMLGR RSDSDQFEIN QHASVDSDAY RIKPTFWKTK ICSKWEITGQ  240
CPFGERCHFA HGHSELKAPA GRTEMEATTN FAPAPIKPLA PAVDPSPANA VPCAPVKEQQ  300
QQPEEGKKFL KWKPTKKICS VYADWIEDLV PPHLLCRKAE DEF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	5e-73	C3H family protein