PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191632.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family YABBY
Protein Properties Length: 199aa    MW: 22407.3 Da    PI: 8.8169
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191632.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY222.61.1e-6821702170
           YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldes..lkeelleelkveeenlksnvekeesast 94 
                     +++ +seq+Cy+ CnfCn +lavsvP +slf +vtvrCGhC++l svn+a a q l+++s  + s    ++l++    ++ ++++ + ++++ s+
  XP_019191632.1   2 STDVASEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCSNLWSVNMAAAFQSLSSSSSSSPShwQDHHLHQVPSYTSPEYRMDYGSSSKYSN 96 
                     567799*********************************************99999888764333002333555555555555555555555555 PP

           YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                      + + + +  +++       v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl
  XP_019191632.1  97 RMGMAMRPPITNRTEE--RIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 170
                     5555443333333333..3599****************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    
MSTDVASEQL CYIPCNFCNI VLAVSVPCSS LFDIVTVRCG HCSNLWSVNM AAAFQSLSSS  60
SSSSPSHWQD HHLHQVPSYT SPEYRMDYGS SSKYSNRMGM AMRPPITNRT EERIVNRPPE  120
KRQRVPSAYN QFIKEEIQRI KANNPDISHR EAFSTAAKNW AHFPHIHFGL MLESNNQPKI  180
GGTEGTGKHM THRAALLNK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.13e-83YABBY family protein