PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191684.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 748aa MW: 86663.6 Da PI: 8.7308

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191684.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.4	8.8e-22	57	149	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YAke+GF+vr +++++ r+ge+ + + Cs+eg+++e+k+ + ++rr+r+++rtgCka+++++k+k++ ++v+ +el H+H l+ XP_019191684.1 57 DFYVDYAKEAGFDVRHGTKRRN-RKGEVSIKYLLCSREGYKAETKEPqnttKGRKRRRRTSNRTGCKARMVLTKRKTSGYKVHAIELRHTHCLC 149 6***************9999.77779999*****99998877877888999********************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence
MDYTPPSIPG DGQRGHSATE CAMGIHEDGA KYWRPTTQTE KTPYEGQQFD TVDTWIDFYV 60 DYAKEAGFDV RHGTKRRNRK GEVSIKYLLC SREGYKAETK EPQNTTKGRK RRRRTSNRTG 120 CKARMVLTKR KTSGYKVHAI ELRHTHCLCS NASKPFLKIN RQLDIGHKTF LAHCAKANIG 180 PTKAFRLFKE MVGSFTDIGA TCIEFCNFRR DLLAYIAEAD AQMVIENMFK RKEDNPDFYF 240 DFDIDEDAQL TRLFWADAQS RRNYACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKRCIT 300 FGAGLIAKED VESYEWLLTK FNTAMEYAPR CTTTDQDPAL KIVVPQTMPT TRHRFCMWHI 360 MTKVGEKVGV ALWHNPDFKK ALNSTVWDDT LTTDEFERKW ETIMKEYNLK DHRWFTQLYE 420 ARASWIPAYF NDILMAGLLR TTSRSESENS YFGKFTNHHC SLVEFIAQFN SAIGEQRHKQ 480 ARLIAENEGS YPETKTPLSI EKHTTTVYTI NIFYEFQEEV WEASFTCDII DKHNIGDIWK 540 YTIKDTNGKM YEVTETPQAM EIECACKKFN RVGILCRHVL LVMKKNGYEL IPEKYIVPRW 600 TRNACAHPLY DVPWARKTNI TKTNETTKVA NQLWNEFYNC MGLANGWPDK MDQMLATLQQ 660 LKKDLQKEAH QTQEGAHTET MFERLVESSR PSDIQIKPPQ VAKNKGSGKR LKSSKEIATT 720 KNQKKKERTC NICDLPGHNS RTCPDKLA

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence

MDYTPPSIPG DGQRGHSATE CAMGIHEDGA KYWRPTTQTE KTPYEGQQFD TVDTWIDFYV  60
DYAKEAGFDV RHGTKRRNRK GEVSIKYLLC SREGYKAETK EPQNTTKGRK RRRRTSNRTG  120
CKARMVLTKR KTSGYKVHAI ELRHTHCLCS NASKPFLKIN RQLDIGHKTF LAHCAKANIG  180
PTKAFRLFKE MVGSFTDIGA TCIEFCNFRR DLLAYIAEAD AQMVIENMFK RKEDNPDFYF  240
DFDIDEDAQL TRLFWADAQS RRNYACFGDV MSFDATYSTN RYKLVFVPFT GVDNHKRCIT  300
FGAGLIAKED VESYEWLLTK FNTAMEYAPR CTTTDQDPAL KIVVPQTMPT TRHRFCMWHI  360
MTKVGEKVGV ALWHNPDFKK ALNSTVWDDT LTTDEFERKW ETIMKEYNLK DHRWFTQLYE  420
ARASWIPAYF NDILMAGLLR TTSRSESENS YFGKFTNHHC SLVEFIAQFN SAIGEQRHKQ  480
ARLIAENEGS YPETKTPLSI EKHTTTVYTI NIFYEFQEEV WEASFTCDII DKHNIGDIWK  540
YTIKDTNGKM YEVTETPQAM EIECACKKFN RVGILCRHVL LVMKKNGYEL IPEKYIVPRW  600
TRNACAHPLY DVPWARKTNI TKTNETTKVA NQLWNEFYNC MGLANGWPDK MDQMLATLQQ  660
LKKDLQKEAH QTQEGAHTET MFERLVESSR PSDIQIKPPQ VAKNKGSGKR LKSSKEIATT  720
KNQKKKERTC NICDLPGHNS RTCPDKLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	113	RKRRR
2	109	115	RKRRRRT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	6e-89	FAR1 family protein