PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191767.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 255aa MW: 27442.7 Da PI: 6.8798

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191767.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	63.6	3.8e-20	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEd lv++v+q+G+++W++I+ ++ gR++k+c++rw + XP_019191767.1 14 KGSWTPEEDATLVKLVEQHGPRNWSLISTGIP-GRSGKSCRLRWCNQ 59 799***************************.*********985 PP
2	Myb_DNA-binding	52.9	8.6e-17	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++++eEd +++a++ +G++ W++Iar ++ gRt++ +k++w++ XP_019191767.1 68 PFSPEEDAVILRAHAVHGNR-WAAIARLLP-GRTDNAIKNHWNST 110 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence
MEDGGGGGGG GRVKGSWTPE EDATLVKLVE QHGPRNWSLI STGIPGRSGK SCRLRWCNQL 60 SPAVQHRPFS PEEDAVILRA HAVHGNRWAA IARLLPGRTD NAIKNHWNST LRRRKRSAED 120 AAAAAPAVDK RACLDESSAE SKSEEQSKIG GAEDVLRLDG PETLLSLFPP GGKAVADPPV 180 GENSAAEEGE EPPPSSVSED GKEGRSKVEI EIKDKCLLIM HRMIAHEVRS YIDKLRAGGG 240 LGPDFESNVQ QRPKT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-52	MYB family protein