PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191783.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 194aa    MW: 21773.6 Da    PI: 7.2351
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191783.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260138.22.9e-4381071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++ap+fp+++p+kfa+vhk+FGasnv+k+l+++p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq q++ql+ +la
  XP_019191783.1   8 PCASCKLLRRRCAKDCIFAPHFPSDDPHKFAIVHKVFGASNVSKMLQEIPADHRGDAVSSLVYEANARLRDPVYGCVGAITYLQDQVSQLQMQLA 102
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019191783.1 103 VAQAE 107
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    
MAAGASSPCA SCKLLRRRCA KDCIFAPHFP SDDPHKFAIV HKVFGASNVS KMLQEIPADH  60
RGDAVSSLVY EANARLRDPV YGCVGAITYL QDQVSQLQMQ LAVAQAEILC IQTQQRRPPQ  120
QDSSTTVPPP QIQLRDAAAD LDDDRRFKSF FVHQQNNHHQ CFNNFTPSDN TVILHESFKR  180
APFFEHYDMV SSLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-69LBD family protein