PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191785.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 193aa    MW: 21644.5 Da    PI: 7.5308
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191785.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.43.6e-4181061100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +Ca+Ck+lrr+CakdC++ap+fp+++p+kfa+vhk+FGasnv+k+l+  p ++r da+sslvyeA+ar+rdPvyG+vg i+ lq q++ql+ +la
  XP_019191785.1   8 PCASCKLLRRRCAKDCIFAPHFPSDDPHKFAIVHKVFGASNVSKMLQI-PADHRGDAVSSLVYEANARLRDPVYGCVGAITYLQDQVSQLQMQLA 101
                     7*********************************************87.9********************************************* PP

          DUF260  96 llkee 100
                     ++++e
  XP_019191785.1 102 VAQAE 106
                     99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    
MAAGASSPCA SCKLLRRRCA KDCIFAPHFP SDDPHKFAIV HKVFGASNVS KMLQIPADHR  60
GDAVSSLVYE ANARLRDPVY GCVGAITYLQ DQVSQLQMQL AVAQAEILCI QTQQRRPPQQ  120
DSSTTVPPPQ IQLRDAAADL DDDRRFKSFF VHQQNNHHQC FNNFTPSDNT VILHESFKRA  180
PFFEHYDMVS SLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.11e-66LBD family protein