PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191836.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 233aa MW: 26327.7 Da PI: 7.9021

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191836.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.7e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l ++++G ++W++ +r g+ R++k+c++rw +yl XP_019191836.1 14 KGPWTPEEDQILTSFIQRYGHENWRALPRQAGLLRCGKSCRLRWINYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	56.2	8.2e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++++E+e ++++++ lG++ W++Ia++++ gRt++++k++w+++l XP_019191836.1 67 RGNFSKDEEETIIQLHQTLGNR-WSAIASRLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 233 aa Download sequence
MVRAPCCEKM GMKKGPWTPE EDQILTSFIQ RYGHENWRAL PRQAGLLRCG KSCRLRWINY 60 LRPDIKRGNF SKDEEETIIQ LHQTLGNRWS AIASRLPGRT DNEIKNFWNT HLKKRLQHHG 120 SPYSPNFNVV GNITPIQIGD SSIHLRFPAA PTTVNSMYSS SPMTTKMEEA EESMQERESY 180 QNLGTTNDDS GIVYLPSSSS VLPMELGGCE TSSSIGNDAV FWYNLLINAG NTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-73	MYB family protein