PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019191854.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 201aa MW: 22920.6 Da PI: 8.4802

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019191854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.4	4.6e-15	6	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd +l+ +++ +G +W+ ++ g+ Rt+k+c++rw +yl XP_019191854.1 6 RGAWSPEEDRKLISYIRNHGIWNWTQMPKFAGLSRTGKSCRLRWVNYL 53 89****************99**********************97 PP
2	Myb_DNA-binding	39.1	1.8e-12	59	104	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE e++++ + +G++ W++ a+ ++ gR+++++k++++++l XP_019191854.1 59 RGPFSREEVEIIIKMYESMGNR-WSAMAAQLP-GRSDNEIKNFFHTHL 104 89******************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence
MAEVKRGAWS PEEDRKLISY IRNHGIWNWT QMPKFAGLSR TGKSCRLRWV NYLRPDVKRG 60 PFSREEVEII IKMYESMGNR WSAMAAQLPG RSDNEIKNFF HTHLKKHLRR QPKHAAAAAD 120 RRSKDDNTTS DDAKIIIADH CNSSSVVILE SSRSCSSRVE NNDAPSGGNN GTAPAFSSDT 180 HDDDVNAFWY DVLMEAEYLN F

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31180.1	8e-51	MYB family protein