PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191872.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 262aa    MW: 29952.1 Da    PI: 9.8924
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191872.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-082065346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     rWT+eE +l+  a ++   +   +W ++a +++ g++ +++ + +  
   XP_019191872.1 20 RWTKEENKLFESALAMIDERnpdRWFKVADMIP-GKSVYDVLNQYKE 65
                     9********************************.*******999875 PP
2Myb_DNA-binding41.92.3e-13117161347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + +++G+g+W+ I+r +   +t+ q+ s+ qky
   XP_019191872.1 117 PWTEEEHRRFLMGLQKYGKGDWRNISRNFVISKTPTQVASHAQKY 161
                      8*****************************789***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MESLLISRPS WLIHQSKSTR WTKEENKLFE SALAMIDERN PDRWFKVADM IPGKSVYDVL  60
NQYKELVADV SNIEAGLVPI PGYLASPFAL QLVDDRGFEV HRKRGRSCDH ERKKGVPWTE  120
EEHRRFLMGL QKYGKGDWRN ISRNFVISKT PTQVASHAQK YFLRQHSGGK DKRRPSIHDI  180
TTVNVAETKH SLLDEKSQNV PVLVSRSASM PEMLGWNFPD DGALMASVFS SPQGSQFMSY  240
PSEIAYAKLG FQIPPTRYQI RG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102114RKRGRSCDHERKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.11e-83MYB_related family protein