PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019191959.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 262aa    MW: 28332 Da    PI: 10.4791
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019191959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.67.7e-32122178158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQy++Il+RRq Rakle+++kl  k+r+pylheSRh hA++R RgsgGrF
  XP_019191959.1 122 DGPIYVNAKQYHGILRRRQIRAKLEAQNKL-VKTRRPYLHESRHLHAVNRVRGSGGRF 178
                     57****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MEPLSLQLQG HASPPAQSAF QSPREVTVAR KTTSQDPCPS SGSESRGKHV PAQIKPMFVI  60
SNPEFPVNPA QGEMGQSTIH SNYNYSDPYF SGLFTAYGPQ PFPQMVGIAP ARVPLPLDLA  120
EDGPIYVNAK QYHGILRRRQ IRAKLEAQNK LVKTRRPYLH ESRHLHAVNR VRGSGGRFLS  180
TKKLRESLSM NCGSGSDSAK HHRASTASST PHGMSQGVHG NVIFQPPDHH RLSSLPSHMA  240
AAAASMQGGG GLTCNAYSPG VR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-46NF-YA family protein