PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192013.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

CPP

Protein Properties

Length: 629aa MW: 67451 Da PI: 8.4242

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192013.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	45.7	1.3e-14	156	195	2	42
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+CnCk+s+Clk+YCeCfa+g +C+ C+C +C+N+ e+ XP_019192013.1 156 KQKQCNCKHSRCLKLYCECFASGIYCDG-CNCVNCHNNVEN 195 89************************.******9875 PP
2	TCR	50.8	3.3e-16	240	279	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 k++kgC+Ckks ClkkYCeCf+a+ Cse+CkC dCkN e XP_019192013.1 240 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 279 589***********************************65 PP

Sequence ? help Back to Top
Protein Sequence Length: 629 aa Download sequence
MEKSEGGDFP PKRSQPDVAS TVALTPVLAS PDVPTKKLAR QLDFTSFGGG GGGGGDGSAA 60 AAIFSEHHGQ IQPQVGKPSQ SPRPQLQPQL MVKPSHPPRP QLQLHSQPQQ QHILLMPMQQ 120 PPAPPHLPQI RPLKPESPRA RPRQSAAEVK DGTPKKQKQC NCKHSRCLKL YCECFASGIY 180 CDGCNCVNCH NNVENEAARR EAVEATLERN PNAFRPKIAS SPHGVRDNRE EAGDGLVLGK 240 HNKGCHCKKS GCLKKYCECF QANILCSENC KCMDCKNFEG SEERQALFHG DHANNMAYLQ 300 QAANAAITGA IGASGYGSPP VNKKRKGQEL FFGSTMKNPI HTFGQFPQAN HIKSSVPSSS 360 MSSIPNARVG NLAAMGPSKF TYRSLLADLI QPLDVKELCS VLVYSSRQAA KMLADEKNAR 420 EDQRETSAPS LSQEQLENQK GCMGKVLADN CSSGSQDDKK GTSERSSDSA DVSKERPMSP 480 GTLALMCDEQ DTVFAAAAGS PNESTSICNT SSQVSHGKAM TEAYAEQERI VLMKFRDCLN 540 RLITLGEIKE TKCSSMARAS DSVYQRGGGV IINNGTQPEA YSNGVAMATV PPPSRAPETV 600 SSSTSVGGVS SPHPVVSPAA KNGDQKPKN

Sequence ? help Back to Top

Protein Sequence Length: 629 aa Download sequence

MEKSEGGDFP PKRSQPDVAS TVALTPVLAS PDVPTKKLAR QLDFTSFGGG GGGGGDGSAA  60
AAIFSEHHGQ IQPQVGKPSQ SPRPQLQPQL MVKPSHPPRP QLQLHSQPQQ QHILLMPMQQ  120
PPAPPHLPQI RPLKPESPRA RPRQSAAEVK DGTPKKQKQC NCKHSRCLKL YCECFASGIY  180
CDGCNCVNCH NNVENEAARR EAVEATLERN PNAFRPKIAS SPHGVRDNRE EAGDGLVLGK  240
HNKGCHCKKS GCLKKYCECF QANILCSENC KCMDCKNFEG SEERQALFHG DHANNMAYLQ  300
QAANAAITGA IGASGYGSPP VNKKRKGQEL FFGSTMKNPI HTFGQFPQAN HIKSSVPSSS  360
MSSIPNARVG NLAAMGPSKF TYRSLLADLI QPLDVKELCS VLVYSSRQAA KMLADEKNAR  420
EDQRETSAPS LSQEQLENQK GCMGKVLADN CSSGSQDDKK GTSERSSDSA DVSKERPMSP  480
GTLALMCDEQ DTVFAAAAGS PNESTSICNT SSQVSHGKAM TEAYAEQERI VLMKFRDCLN  540
RLITLGEIKE TKCSSMARAS DSVYQRGGGV IINNGTQPEA YSNGVAMATV PPPSRAPETV  600
SSSTSVGGVS SPHPVVSPAA KNGDQKPKN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29000.1	1e-151	CPP family protein