PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192042.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 277aa MW: 31056.6 Da PI: 7.8556

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192042.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.8	4.3e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd l+ +v+++G+g +W + +++ g++R++k+c++rw++yl XP_019192042.1 14 RGPWSPEEDTTLKSYVQKHGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	45.7	1.5e-14	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd++++ + + G++ W+ Ia++++ gRt++++k++w++ XP_019192042.1 69 GGFTHEEDQIILTLYTNIGSR-WSVIASHLP-GRTDNDVKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MGRAPCCDKT KVKRGPWSPE EDTTLKSYVQ KHGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPDIKHGG FTHEEDQIIL TLYTNIGSRW SVIASHLPGR TDNDVKNYWN TKLKKKLAAA 120 TNNNPDVFPQ TVATNFNNPT TYYGVQEMVG SSQSLHFPLP NLMEVQENCT ANNVSSYNPE 180 VSAGYSTSFA YNNNNEKRFG TSWLGNGGIE EDVFRMDMMM SSSTSLLSSS SSPSSSPSCF 240 DHLMMNYGFD FQDNFTPPNI LHNNFSTNHP SNGFDQY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	5e-67	MYB family protein