PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192169.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB
Protein Properties Length: 325aa    MW: 36020.4 Da    PI: 4.9934
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192169.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.33.4e-13348146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W  eEde l++ vk++G+++W++I ++  + R++k+c++rw +
   XP_019192169.1  3 KGPWKVEEDEVLLNHVKKYGPRDWSSIQSKGLLQRSGKSCRLRWVN 48
                     79*************************9998899**********87 PP
2Myb_DNA-binding42.71.3e-135999345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++++eE+   +d+ +++G++ W++Ia +++ gRt++++k++w 
   XP_019192169.1 59 KFSAEEERVVIDLQAEFGNK-WARIATYLP-GRTDNDVKNFWS 99
                     79******************.*********.***********6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MKKGPWKVEE DEVLLNHVKK YGPRDWSSIQ SKGLLQRSGK SCRLRWVNKL RPNLKNGVKF  60
SAEEERVVID LQAEFGNKWA RIATYLPGRT DNDVKNFWSS RRKRLARILH NNNHNSAASS  120
SQSNMSPEKN SVAVEEPPAF HQASSLEAQK LSSIDDEQEG MLVSKPQSCS SSSNVVGKSE  180
EACNVVPAMP PENIPNPFIF EPVNLFHPHL LSFPEFPQLL TDDGIALPPA IESLPQDGFN  240
DNLGPLWDPS LLDMFGSSGA CDASGMGNGM PQLPFPSPWG APEGSFRRED GVKKEAGTLT  300
PDSFIDDFPI DMFDHIEPLP SPSDW
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.18e-68MYB family protein