PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192293.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 210aa    MW: 23857.8 Da    PI: 4.0666
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192293.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260119.32.2e-3771071100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrr+C+++Cv+apyf  +q +++fa+vhk+FGasnv+kll +lp + r++a+ s+ yeA ar++dP+yG+v+ i++l+qq+++l +e+
  XP_019192293.1   7 SCGACKFLRRRCSNECVFAPYFFYDQaASHFAAVHKVFGASNVSKLLLHLPVDSRSEAAISISYEAMARMQDPIYGCVAQIFALEQQVASLMEEI 101
                     6*********************999978******************************************************************* PP

          DUF260  95 allkee 100
                     + ++++
  XP_019192293.1 102 ENIEKQ 107
                     998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MTGLGSSCGA CKFLRRRCSN ECVFAPYFFY DQAASHFAAV HKVFGASNVS KLLLHLPVDS  60
RSEAAISISY EAMARMQDPI YGCVAQIFAL EQQVASLMEE IENIEKQMAY CACEGPEQQC  120
MVNDELLFFS EYNNMSINMN HNVTVPFLED SYANSTPYSQ MNMQNPPING WEDEIFFPFS  180
DSDISDIFNE TIDPNIYLQY QLMDNGNIYH
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.17e-54LBD family protein