PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192305.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 362aa MW: 39088.6 Da PI: 7.1582

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	216	254	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq XP_019192305.1 216 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 254 6677889999999999998.....8******************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MNRGVLQSSS LPVQQMMGGG SPNWWSIINN TMRPPLPHHQ LHHHHHQPPP PPPFLAPLPT 60 LFPSPPPPTA TPSLPPLSAS SWTDNNHHEH QLPESWSQLL LGGLVGEEDK SGFSGMQQLL 120 SHASASAAAM VYDVKQENPT NTYVYGGGHG GNVEFPAKSC VTSLSSNNML DFSNKSDARH 180 PPPDHSSECN STATGGAPTK KARIQPSSTQ STFKVRKEKL GDRITALHQL VSPFGKTDTA 240 SVLLEAIGYI RFLQSQIEAL SLPYLGNGSG NNMRHQQQSF VQGAERNSLF PEDPGQLLND 300 NCLKRKGTSD HHQPQDGDEE AKKDLRSRGL CLVPISCTLQ VGSDNGADYW APAAFGGGGF 360 RS

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MNRGVLQSSS LPVQQMMGGG SPNWWSIINN TMRPPLPHHQ LHHHHHQPPP PPPFLAPLPT  60
LFPSPPPPTA TPSLPPLSAS SWTDNNHHEH QLPESWSQLL LGGLVGEEDK SGFSGMQQLL  120
SHASASAAAM VYDVKQENPT NTYVYGGGHG GNVEFPAKSC VTSLSSNNML DFSNKSDARH  180
PPPDHSSECN STATGGAPTK KARIQPSSTQ STFKVRKEKL GDRITALHQL VSPFGKTDTA  240
SVLLEAIGYI RFLQSQIEAL SLPYLGNGSG NNMRHQQQSF VQGAERNSLF PEDPGQLLND  300
NCLKRKGTSD HHQPQDGDEE AKKDLRSRGL CLVPISCTLQ VGSDNGADYW APAAFGGGGF  360
RS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-87	bHLH family protein