PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192499.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

HSF

Protein Properties

Length: 441aa MW: 49550.1 Da PI: 4.8289

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192499.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109.3	2.8e-34	107	199	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++ +++d++++ +isw ++++sfvv+d+++fa+++Lp++Fkh nf+SF+RQLn+Y F+k+++ + weF+++ F+kgkk+ll++ XP_019192499.1 107 FLSKTFAMVDDPNTDAIISWGASKKSFVVWDPHRFATELLPQHFKHANFSSFIRQLNTYKFRKIDSGR---------WEFANEAFQKGKKHLLKY 192 9******************999************************************9988.........************** PP XXXXXXX CS HSF_DNA-bind 97 ikrkkse 103 ikr+k++ XP_019192499.1 193 IKRRKQH 199 **986 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MQNRQQTPSQ QPFFFFFSFN GASSELNRYH PFQEIENRAE GLFAPPEMVV ESSGIDGEVT 60 VKVEPPEVVV LDDCDVDYGC GDGGNGGLGL GLRSMEGVKE VGGPPPFLSK TFAMVDDPNT 120 DAIISWGASK KSFVVWDPHR FATELLPQHF KHANFSSFIR QLNTYKFRKI DSGRWEFANE 180 AFQKGKKHLL KYIKRRKQHN HPAMQQQGGA ENRVGACKNG AAEVELQKLR TDQSTLKMEV 240 MTLKQQQETT ESYLASIEEK LELAETRQKR MVVFMAKVLK NPLFIQCLIG KMKQNAALRG 300 CEATKKRRLA ALESHELLAK ATDDMIITTA NESVDVKPLV AQASLVDQSE VPMLFNGVES 360 NRSVEEQQAN IFSENFFAWE KLMEEDTMIY ENIVTAEEHQ SNIVYELEDM LAGDLVEQDN 420 CPVSVPQAIC SEESSMGSLL D

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MQNRQQTPSQ QPFFFFFSFN GASSELNRYH PFQEIENRAE GLFAPPEMVV ESSGIDGEVT  60
VKVEPPEVVV LDDCDVDYGC GDGGNGGLGL GLRSMEGVKE VGGPPPFLSK TFAMVDDPNT  120
DAIISWGASK KSFVVWDPHR FATELLPQHF KHANFSSFIR QLNTYKFRKI DSGRWEFANE  180
AFQKGKKHLL KYIKRRKQHN HPAMQQQGGA ENRVGACKNG AAEVELQKLR TDQSTLKMEV  240
MTLKQQQETT ESYLASIEEK LELAETRQKR MVVFMAKVLK NPLFIQCLIG KMKQNAALRG  300
CEATKKRRLA ALESHELLAK ATDDMIITTA NESVDVKPLV AQASLVDQSE VPMLFNGVES  360
NRSVEEQQAN IFSENFFAWE KLMEEDTMIY ENIVTAEEHQ SNIVYELEDM LAGDLVEQDN  420
CPVSVPQAIC SEESSMGSLL D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	196	LKYIKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-72	HSF family protein