PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192512.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 229aa    MW: 25041.7 Da    PI: 7.8737
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192512.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.19.3e-41451441100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+++pyf   +p+kfa vhk+FGasnv+k+l ++pe+ r da++slvyeA+ r+rdPvyG++g+il+lqqq++ l+ael+
  XP_019192512.1  45 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLMDVPESLRADAANSLVYEANLRLRDPVYGCMGTILALQQQVQALQAELN 139
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_019192512.1 140 EVRAE 144
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MSRERERYEE IGKKIKREGD DFSQMALGRR HNVLGPAGTL NTVTPCAACK LLRRRCAQEC  60
PFSPYFSPLE PHKFASVHKV FGASNVSKML MDVPESLRAD AANSLVYEAN LRLRDPVYGC  120
MGTILALQQQ VQALQAELNE VRAEIMRYKF GESAANIIIP SPQVSFFLTS GAVSIAAAPP  180
PLPPPPPPHL PPPVLLPRSA SFSLYTPAPS APDNADFGTI SSENISYFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-85LBD family protein