PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192672.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 297aa    MW: 32531.3 Da    PI: 9.0923
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192672.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.94.7e-13118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r + ++Rt+ q+ s+ qky
   XP_019192672.1 118 PWTEEEHRTFLIGLERLGKGDWRGISRNFVTTRTPTQVASHAQKY 162
                      8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    
MGRKCSLCGS AGHNSRTCTT LKPSHHHHHH HHHHHSSSSS VNVGGLRLFG VELEISSSSS  60
SSAMMKKSCS LDCLSSSSSL SSPHFSANEI SAEKTSLTYP ASDATIFEAN KEKKKGVPWT  120
EEEHRTFLIG LERLGKGDWR GISRNFVTTR TPTQVASHAQ KYFLRSQSGL NSNNNSKNRR  180
RASLFDMVEL HSIKSQQEED DDQEQTPNKH SSPSFLQAHD NNAAGKALNS RVIMSSSSTG  240
SSSSNAVLDL ELTIGAPNKN VLLKIFSIAQ LIWSTNLFVS SALTMCRVSL IPTSWEI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-34MYB_related family protein