PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192714.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 592aa MW: 66479.1 Da PI: 7.5942

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192714.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.8	6.4e-22	87	171	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Yn+YA+++GFsvrk +++++ +++i +++f+Csk+g+++++ k ++ trtgC+a ++ +dg w vtk e+ HnHel+ XP_019192714.1 87 LYNNYAYRLGFSVRKGHQRYKGSTKTIQMKNFCCSKSGYKANSGVK----AYSKIDTRTGCEAFVQFDVGDDGLWTVTKHEKVHNHELC 171 7**************************************99877....8999*******************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 592 aa Download sequence
MEDGTEQSNS AVGAGHSIQG VLHLAIVFAF APFAFLYDFV IHFSEGIVDG SVSSDQADVD 60 NDGSSSIPVD QDLVGLVVSN VDEAFELYNN YAYRLGFSVR KGHQRYKGST KTIQMKNFCC 120 SKSGYKANSG VKAYSKIDTR TGCEAFVQFD VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR 180 SHRSVGDNQL LYLQGLKDSG VALADGIRFL KHQSGGSPLV SFTSRDVYNS MAADIVKRLD 240 GTDSNSLIEI FRRRQSTESD FFFDFELDLD ARLCSFFWRD GQMRRDYEMF GDFLVYDTTY 300 RTNKYDMIYG PFVGMNHHCM NVMFGCGFLM NERIESFVWL FKVFLRSMGG KYPQSIMTYQ 360 CAVMAAAISK VFPTSRHRLC IWHIGNACHQ EMVLNDGHQQ KYHVWRPDID ITSIPDKYVL 420 KRWTKKVIDG RNVNIDSIVY NVGIPPSIWV FDISRKFQRL VVSSHDSSVA RKLCDEAVDD 480 VKKKVEAEIG YVHIEECGVS SSSGSVQNPS SRRLKGERNK RRSGVIEKKY SLARGRRSAA 540 NQAALSTKGA VQSLVLEDIS KLAGDGYLVH PSSSSSDFVQ FSKGLDDNVG VD

Sequence ? help Back to Top

Protein Sequence Length: 592 aa Download sequence

MEDGTEQSNS AVGAGHSIQG VLHLAIVFAF APFAFLYDFV IHFSEGIVDG SVSSDQADVD  60
NDGSSSIPVD QDLVGLVVSN VDEAFELYNN YAYRLGFSVR KGHQRYKGST KTIQMKNFCC  120
SKSGYKANSG VKAYSKIDTR TGCEAFVQFD VGDDGLWTVT KHEKVHNHEL CVFNKSHLLR  180
SHRSVGDNQL LYLQGLKDSG VALADGIRFL KHQSGGSPLV SFTSRDVYNS MAADIVKRLD  240
GTDSNSLIEI FRRRQSTESD FFFDFELDLD ARLCSFFWRD GQMRRDYEMF GDFLVYDTTY  300
RTNKYDMIYG PFVGMNHHCM NVMFGCGFLM NERIESFVWL FKVFLRSMGG KYPQSIMTYQ  360
CAVMAAAISK VFPTSRHRLC IWHIGNACHQ EMVLNDGHQQ KYHVWRPDID ITSIPDKYVL  420
KRWTKKVIDG RNVNIDSIVY NVGIPPSIWV FDISRKFQRL VVSSHDSSVA RKLCDEAVDD  480
VKKKVEAEIG YVHIEECGVS SSSGSVQNPS SRRLKGERNK RRSGVIEKKY SLARGRRSAA  540
NQAALSTKGA VQSLVLEDIS KLAGDGYLVH PSSSSSDFVQ FSKGLDDNVG VD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-53	FAR1 family protein