PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019192775.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 1000aa MW: 112270 Da PI: 4.9396

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019192775.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.1	1e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l XP_019192775.1 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.8	1.7e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l XP_019192775.1 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 1000 aa Download sequence
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDVRHR KRKRKGIDYN AEIPFEKKPP PGFYDVTDED RTVEQPKFPT 240 TIEELEGERR VDKEARLRKQ DIARNKIAQR QDAPSAILHA NKLNDPETVR KRTKLNLPAP 300 QISDHELEAI SKFGIASDLI GSEELLEGNA ATRALVANYT QTPRQGMTPL RTPQRTPANK 360 QDAIMMEAEN QRRLSQSQTP LLGGENPMLH PSDFSGVTPK KKEIQTPNPL LTPSATPGGT 420 GLTPRIGMTP SSDGYSFGMT PKGTPMRDEL HINEEMDMDG GKVGRSDSRR ELRSGLQGLP 480 NPKNEYQIVM QPLPEESEEP EEKIEEDMSE RIAREKAEEE ARQQALLRKR SKALQRDLPR 540 PPAASLDLIK SSLIRADEDK SSFVPPTLIE QADELIRKEL LSLLEHDNVK YPIDEKSEKE 600 KKKGTKRKSV PVPVIEDFEE DELKEAEDLI KGEAQFLRVA MGHETESVDE FVEAHKTCSS 660 DIMYFPTRNA YGLSSVAGNM EKLSALLSEF ENVKKKMNDD TKKAQKLEQK VKVLTNGYQF 720 RAGKFWSQIE ATFKQMDTAG TELECFQVLQ KQEQLAASNR INNIWEEVQK QKELERTLQK 780 RYGDLLVEKE RIEHLMDEYK KQAQMQEIEA KNRALELAKA EGDAADNKMI VAPSNEDPEP 840 VASVNEHESS TAVDPAQESP NKQTEDVSSM AVDPAQESPN KQTEVESSMA DDTAQENPNE 900 QTDNAQEQPS GSPKAGMDID EVGNTTDTND LSHTTPAARE SCLTDEVHAE NACNESESGI 960 VSSGSPQLMN ADDNPTSGND GSASASAEAS VSPIAEDQVS

Sequence ? help Back to Top

Protein Sequence Length: 1000 aa Download sequence

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEAGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDVRHR KRKRKGIDYN AEIPFEKKPP PGFYDVTDED RTVEQPKFPT  240
TIEELEGERR VDKEARLRKQ DIARNKIAQR QDAPSAILHA NKLNDPETVR KRTKLNLPAP  300
QISDHELEAI SKFGIASDLI GSEELLEGNA ATRALVANYT QTPRQGMTPL RTPQRTPANK  360
QDAIMMEAEN QRRLSQSQTP LLGGENPMLH PSDFSGVTPK KKEIQTPNPL LTPSATPGGT  420
GLTPRIGMTP SSDGYSFGMT PKGTPMRDEL HINEEMDMDG GKVGRSDSRR ELRSGLQGLP  480
NPKNEYQIVM QPLPEESEEP EEKIEEDMSE RIAREKAEEE ARQQALLRKR SKALQRDLPR  540
PPAASLDLIK SSLIRADEDK SSFVPPTLIE QADELIRKEL LSLLEHDNVK YPIDEKSEKE  600
KKKGTKRKSV PVPVIEDFEE DELKEAEDLI KGEAQFLRVA MGHETESVDE FVEAHKTCSS  660
DIMYFPTRNA YGLSSVAGNM EKLSALLSEF ENVKKKMNDD TKKAQKLEQK VKVLTNGYQF  720
RAGKFWSQIE ATFKQMDTAG TELECFQVLQ KQEQLAASNR INNIWEEVQK QKELERTLQK  780
RYGDLLVEKE RIEHLMDEYK KQAQMQEIEA KNRALELAKA EGDAADNKMI VAPSNEDPEP  840
VASVNEHESS TAVDPAQESP NKQTEDVSSM AVDPAQESPN KQTEVESSMA DDTAQENPNE  900
QTDNAQEQPS GSPKAGMDID EVGNTTDTND LSHTTPAARE SCLTDEVHAE NACNESESGI  960
VSSGSPQLMN ADDNPTSGND GSASASAEAS VSPIAEDQVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	186	205	KRRELKAAGIDVRHRKRKRK
2	200	205	RKRKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	MYB family protein