PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192823.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family FAR1
Protein Properties Length: 226aa    MW: 25894.4 Da    PI: 8.8144
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192823.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR167.63.2e-2119105191
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++Yn+YA +vGFsvr+ k+++s+ +++++++ f Csk g+++++ k       ++   rtgC a ++  ++++g w v+k e+ HnHel+p
  XP_019192823.1  19 DMYNDYAFRVGFSVRRGKQRYSSATKTMKTKMFHCSKDGFKRSTGKG----CYSKIDGRTGCGAFVQFDLHENGMWIVSKHEKLHNHELVP 105
                     58****************************************99887....88999*********************************86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    
MLIQDLVGMS VCSVDEAYDM YNDYAFRVGF SVRRGKQRYS SATKTMKTKM FHCSKDGFKR  60
STGKGCYSKI DGRTGCGAFV QFDLHENGMW IVSKHEKLHN HELVPPSKSY LLRSHRMVSR  120
NHISYLTDLK SSGVSVADGV RLLKTQSGGS PLVGFTSGDA YNSLCTDALN KLDSTDSNTL  180
IEIFKRRQSS ERDFYFDFEV DLESRLCSFF WRDGWMRRYY DLFGIC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-21FAR1 family protein