PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019192854.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 209aa    MW: 23786.3 Da    PI: 4.9111
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019192854.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.2e-202275356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +R++f++ q++ Le++Fe +  p  + +++LAk+lgL+ rqV +WFqN+Ra+ k
  XP_019192854.1 22 NRRRFNDAQIQLLESMFEAQTRPELRVKQQLAKNLGLQPRQVAIWFQNKRARSK 75
                    79**************************************************99 PP
2HD-ZIP_I/II101.76.4e-3322113293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ++rr+++ q++lLE++Fe++++ e + K++la++Lglqprqva+WFqn+RAR k+kq+E+dy++Lk +ydal+++ ++L++e+e+L  +l++
  XP_019192854.1  22 NRRRFNDAQIQLLESMFEAQTRPELRVKQQLAKNLGLQPRQVAIWFQNKRARSKSKQIERDYRTLKMSYDALNSKLQTLKQEHESLLLQLQS 113
                     689***********************************************************************************988875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    
MFPVEEEGLH PGKGGGGGKD SNRRRFNDAQ IQLLESMFEA QTRPELRVKQ QLAKNLGLQP  60
RQVAIWFQNK RARSKSKQIE RDYRTLKMSY DALNSKLQTL KQEHESLLLQ LQSLRKLTEE  120
TGDKETDEEG TSLGTEEKPN CTQQTSSPEF VLPLWNANSE QTNHPEAETG VLNIIDTGEG  180
SFSSIGEKSE FETDGFFHNS CCSSQWWEF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.21e-26HD-ZIP family protein