PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193069.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 336aa MW: 36537.2 Da PI: 7.2231

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193069.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.1	3.2e-38	31	146	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaess 78 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ + +++s XP_019193069.1 31 TGKKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKPAIDELAQLpawkpilhhgedannnflN--------TNTS 117 79**************************************************************8888777774433333331........3333 PP TCP 79 sssas..........nsssg.........k 89 ++++ +++ + + XP_019193069.1 118 VVAGPssckvtvggnHNQ-NhgssflattS 146 333331222222221111.12233444432 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MGENENERSW SRLGVVKNAA AFAGGHIVRS TGKKDRHSKV CTAKGPRDRR VRLSAHTAIQ 60 FYDVQDRLGY DRPSKAVDWL INKAKPAIDE LAQLPAWKPI LHHGEDANNN FLNTNTSVVA 120 GPSSCKVTVG GNHNQNHGSS FLATTSMDSD TLIKSFFPMD PNSSANAMHS HSQDLRLSLQ 180 SFQDPTIHGE AQHFFTGAAA TQLGFNASEH HEHHQRLAVW NAGIDSAGTQ GYVFNSPPPA 240 PSLYEQVVGG QSQFLCSQRG PLQSSNTPWI RGWTGALPAT AAHPTHHQSE TTFYPSPLSG 300 LDGFSGFRIP ARIQGEEEEH DGISDKLSSA SSNSFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	7e-74	TCP family protein