PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193077.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TCP

Protein Properties

Length: 326aa MW: 35543.1 Da PI: 7.0587

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193077.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.3	2.6e-38	21	136	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..................ssssaseceaess 78 +gkkdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++ + +++s XP_019193077.1 21 TGKKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLINKAKPAIDELAQLpawkpilhhgedannnflN--------TNTS 107 79**************************************************************8888777774433333331........3333 PP TCP 79 sssas..........nsssg.........k 89 ++++ +++ + + XP_019193077.1 108 VVAGPssckvtvggnHNQ-NhgssflattS 136 333331222222221111.12233444432 PP

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence
MGENENERSW SRLGVVKNGS TGKKDRHSKV CTAKGPRDRR VRLSAHTAIQ FYDVQDRLGY 60 DRPSKAVDWL INKAKPAIDE LAQLPAWKPI LHHGEDANNN FLNTNTSVVA GPSSCKVTVG 120 GNHNQNHGSS FLATTSMDSD TLIKSFFPMD PNSSANAMHS HSQDLRLSLQ SFQDPTIHGE 180 AQHFFTGAAA TQLGFNASEH HEHHQRLAVW NAGIDSAGTQ GYVFNSPPPA PSLYEQVVGG 240 QSQFLCSQRG PLQSSNTPWI RGWTGALPAT AAHPTHHQSE TTFYPSPLSG LDGFSGFRIP 300 ARIQGEEEEH DGISDKLSSA SSNSFH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53230.1	9e-69	TCP family protein