PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193084.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 368aa MW: 42530.6 Da PI: 8.9133

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	71.5	1.9e-22	47	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y +YA+ +GF+vr+s+ kk+ r g i ++++vCs+eg++e++++ +k+rr+r++tr+gC a+++ k++k+g ++vt++e H+H l+ XP_019193084.1 47 LYMKYASIAGFDVRRSSDKKN-RYGAILRKKMVCSREGFKETKNTGpvvsdaPTKARRRRPSTRVGCMARIVFKRDKTGMYVVTTFEDAHTHCLC 140 7*************99998.7888************9988999999************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MEDDAWQREC VMDVSPGGNE TWLTECDPNI KPAQGQMFKN LDDGIELYMK YASIAGFDVR 60 RSSDKKNRYG AILRKKMVCS REGFKETKNT GPVVSDAPTK ARRRRPSTRV GCMARIVFKR 120 DKTGMYVVTT FEDAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNV GASKSFDIYA 180 EMVGGVENVG CTQQDFKNYR REVLAYMQGR DAQMVISKYL DIKSDYSDMY FEYEANEKDQ 240 LARVFWADGV ARQKFSAFGD VVSFDATYKT NRYSLMFVPF TGVDNHKKCV TFAATLIARE 300 DVESYCWALR HFKIAMGSIP RITVTDQDPA MKVAITKEFP ETRHRYCMWH IMTKREFGIF 360 RSRVERSY

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MEDDAWQREC VMDVSPGGNE TWLTECDPNI KPAQGQMFKN LDDGIELYMK YASIAGFDVR  60
RSSDKKNRYG AILRKKMVCS REGFKETKNT GPVVSDAPTK ARRRRPSTRV GCMARIVFKR  120
DKTGMYVVTT FEDAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNV GASKSFDIYA  180
EMVGGVENVG CTQQDFKNYR REVLAYMQGR DAQMVISKYL DIKSDYSDMY FEYEANEKDQ  240
LARVFWADGV ARQKFSAFGD VVSFDATYKT NRYSLMFVPF TGVDNHKKCV TFAATLIARE  300
DVESYCWALR HFKIAMGSIP RITVTDQDPA MKVAITKEFP ETRHRYCMWH IMTKREFGIF  360
RSRVERSY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-50	FAR1 family protein