PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019193122.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family M-type_MADS
Protein Properties Length: 152aa    MW: 16835.1 Da    PI: 5.9714
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019193122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.31.7e-171361149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ie +s r vtfskRr g+ KKA EL   ++a+va+++fs+++++y+y
  XP_019193122.1 13 KKIEKESSRMVTFSKRRSGLVKKAVELEDKTGARVALVVFSPRDHVYTY 61
                    68**********************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    
MMRGTGKKKI EIKKIEKESS RMVTFSKRRS GLVKKAVELE DKTGARVALV VFSPRDHVYT  60
YGDIPAMSDL VERITNNSNA AMSDLVEKIT NNTSIVPYDA GQMQDNGSTS GSASGSNYTN  120
LMNWVDSIDI EGCNNLEETL KLKQILEVLL QD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.12e-13M-type_MADS family protein