PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193324.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 353aa MW: 39176.8 Da PI: 6.3687

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193324.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55.2	1.6e-17	13	60	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+++++ +G+g+W + ++ g+ R++k+c++rw +yl XP_019193324.1 13 KGPWTPEEDQKLIHYIQAHGPGNWGALPKNAGLQRCGKSCRLRWSNYL 60 79********************************************97 PP
2	Myb_DNA-binding	51.7	1.9e-16	66	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ +E+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_019193324.1 66 RGRFSFDEEETIIQLHSVLGNK-WSAIAARLP-GRTDNEIKNYWNTH 110 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MGRAPVDKSG LKKGPWTPEE DQKLIHYIQA HGPGNWGALP KNAGLQRCGK SCRLRWSNYL 60 RPDIKRGRFS FDEEETIIQL HSVLGNKWSA IAARLPGRTD NEIKNYWNTH IRKRLLRMGI 120 DPVTHTPRLD LLDLSSILGS THQLNFPSLL GLQAILNPEL LRLAATNLFT SQNDNINPDL 180 LSNPHLQNPQ TMLLRKLQES QLLMNAPNFQ ANSDHHHQFQ HPLPPCTTSD NNVSSACSDL 240 PMQPYSTMNS SSNLQNGHVF QESLVAANGG SLLQTLENYG GGCFESNQSL SNSSNQSGLE 300 NFSFDSVLST PLNSSSTLVN SGGANTTEDE KESFCSNLMR FDIPDSLDFE DLL

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MGRAPVDKSG LKKGPWTPEE DQKLIHYIQA HGPGNWGALP KNAGLQRCGK SCRLRWSNYL  60
RPDIKRGRFS FDEEETIIQL HSVLGNKWSA IAARLPGRTD NEIKNYWNTH IRKRLLRMGI  120
DPVTHTPRLD LLDLSSILGS THQLNFPSLL GLQAILNPEL LRLAATNLFT SQNDNINPDL  180
LSNPHLQNPQ TMLLRKLQES QLLMNAPNFQ ANSDHHHQFQ HPLPPCTTSD NNVSSACSDL  240
PMQPYSTMNS SSNLQNGHVF QESLVAANGG SLLQTLENYG GGCFESNQSL SNSSNQSGLE  300
NFSFDSVLST PLNSSSTLVN SGGANTTEDE KESFCSNLMR FDIPDSLDFE DLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	8e-85	MYB family protein