PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193562.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 489aa MW: 55215.8 Da PI: 5.9628

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193562.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	426	473	4	48
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT E l+d+v q G g+W+ I r + +Rt+ ++k++w+++l XP_019193562.1 426 WTVSEVRELIDGVSQCGVGRWSQIKRLFFsssDHRTPVDLKDKWRNLL 473 **********************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MIKSPKRSLL FLMHSQEESE ELRNCSEMKG GPDPSISFER ENKMNLEVLD IEPSHTEAEI 60 FEASNDPFSA CEDYLLGVIQ ETECWSDLLE MTNHELSNNK FDDKMLVDDN CLSFPTSFTS 120 GDIDYLENVS SFLPGSISSD NNDEDAIFTP DLTSSGSICM STIKQNKELS IGGPNVDHES 180 LYLQDSSTKN SSQDSSCNGV HTQKRVRKPT RRYIDESADL VNTRRVKKKL EVSTSLSKDK 240 CLQVKCSKKH NKPQALEFQA EETLCEAIQV PFGPLVPEEC HIMHPSSVVK VKPNEIPLCG 300 NKDGDTKHAS DVKKVKLNQL SSFSPENCRQ RYELDVHKVK LNKTVKPKHM SGYEECDDKH 360 TTNVNKANQN HILPFGSKEY LNSPACNVNK VLKSDDEEML MDESDDGVVT LRSDGDGARR 420 KHHRLWTVSE VRELIDGVSQ CGVGRWSQIK RLFFSSSDHR TPVDLKDKWR NLLKATHLQN 480 QSSKNTVRG

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MIKSPKRSLL FLMHSQEESE ELRNCSEMKG GPDPSISFER ENKMNLEVLD IEPSHTEAEI  60
FEASNDPFSA CEDYLLGVIQ ETECWSDLLE MTNHELSNNK FDDKMLVDDN CLSFPTSFTS  120
GDIDYLENVS SFLPGSISSD NNDEDAIFTP DLTSSGSICM STIKQNKELS IGGPNVDHES  180
LYLQDSSTKN SSQDSSCNGV HTQKRVRKPT RRYIDESADL VNTRRVKKKL EVSTSLSKDK  240
CLQVKCSKKH NKPQALEFQA EETLCEAIQV PFGPLVPEEC HIMHPSSVVK VKPNEIPLCG  300
NKDGDTKHAS DVKKVKLNQL SSFSPENCRQ RYELDVHKVK LNKTVKPKHM SGYEECDDKH  360
TTNVNKANQN HILPFGSKEY LNSPACNVNK VLKSDDEEML MDESDDGVVT LRSDGDGARR  420
KHHRLWTVSE VRELIDGVSQ CGVGRWSQIK RLFFSSSDHR TPVDLKDKWR NLLKATHLQN  480
QSSKNTVRG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.2	1e-21	MYB_related family protein