PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019193659.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 254aa    MW: 28160.7 Da    PI: 8.0726
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019193659.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.26.3e-1362108354
                     HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     r+h+e+ErrRR+riN  +++Lr+l+P        K++Ka+ L k++  Ik+L
  XP_019193659.1  62 RNHSEAERRRRERINGHLSTLRSLIPGT-----NKMDKAALLGKVISEIKEL 108
                     58*************************6.....5****************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    
MEFFNSFAGF STENYGIQRM IRNGSSSSSS LVLDTEKGEL VRALVRPGQK GVNPEKALIA  60
LRNHSEAERR RRERINGHLS TLRSLIPGTN KMDKAALLGK VISEIKELRS SASEATKGIL  120
VPTDTDEVRV EQQAEGCDGA SYSIKASLCC DYKHELLSEL RQALDALPLK TLRAEMATLG  180
SRMVSLFVVT ENEEGNDSDE RREFLASSVH QALRSVLDKF YASEEFSSRT SLSSKRRRVS  240
FLNSSASSSL GDFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16873ERRRRE
2235239KRRRV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.18e-31bHLH family protein