PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193712.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

FAR1

Protein Properties

Length: 737aa MW: 84670.4 Da PI: 8.7558

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193712.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	74.9	1.6e-23	46	140	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY +YA+ +GF+vr+s+ kk+ r g i ++++vCs+eg++e++++ +k+rr+r++tr+gC a+++ k++k+g+++vt++e+ H+H l XP_019193712.1 46 EFYMKYAYIAGFDVRRSSDKKN-RYGAILRKKMVCSREGFKETKNTGsvvsdaPTKARRRRPSTRVGCMARIVFKRDKTGRYVVTTFEEAHTHCL 139 6**************99998.7888***********999889999999*************************************99 PP FAR1 90 a 90 + XP_019193712.1 140 C 140 8 PP

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence
MEDDAWQREC VMDVTPGGNE TWVTECDPNI KPAQGQIFNN LDDGIEFYMK YAYIAGFDVR 60 RSSDKKNRYG AILRKKMVCS REGFKETKNT GSVVSDAPTK ARRRRPSTRV GCMARIVFKR 120 DKTGRYVVTT FEEAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNV GASKSFDIYA 180 EIVGGVENVG CTQQDFKNYR REVLAYMQGR DAQMVISKYL DIKFDYSDMY FEYEANEKDQ 240 LARVFWADGV ARKKFCAFGD VVSFDAMYKT NRYSLVFVPF TGVDNHKKCV TFAAALIARE 300 DVESYCWALR HFKIAMGSIP RITVTDQDPA MKVAITKEFP ETRHRYCMWH IMTKVSDKVS 360 PDLARNEEFR RELNDVVWND SASSDYFEVA WKGVIEKYEL QENAWLKRMY EEREKWVPAC 420 FENVFMGRLL RTTSRSEAEN RIFRTNTNKH MCLSEFFIRL ESTIRKQRIT EADLIGACNA 480 QTPPFKTQLR IEQDAAAQYT LTVFYEVQDN ICAGCFDCRV RSVKHEGPVG TYVVEDEYNK 540 RFTVIVENGT NTTTCTCRMY TRIGLLCSHA YAVLIYERIE QTPPQHINPR WTKTALKNTK 600 GVGNDSLQHA RTSSTNSTKE STIINLLYRC LGLAQGDRSK LEPIRKTLED FEATWSERGR 660 ERGGLDKGKQ VIMESYCGVP EPVEVNVHPP PVSSNKGSGK RMRSAKEIAM KEQSKKKRTC 720 KTCGLATGHN SRSCPQK

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence

MEDDAWQREC VMDVTPGGNE TWVTECDPNI KPAQGQIFNN LDDGIEFYMK YAYIAGFDVR  60
RSSDKKNRYG AILRKKMVCS REGFKETKNT GSVVSDAPTK ARRRRPSTRV GCMARIVFKR  120
DKTGRYVVTT FEEAHTHCLC EESYKPFLKV NRKLDVGHQQ FITNCSKVNV GASKSFDIYA  180
EIVGGVENVG CTQQDFKNYR REVLAYMQGR DAQMVISKYL DIKFDYSDMY FEYEANEKDQ  240
LARVFWADGV ARKKFCAFGD VVSFDAMYKT NRYSLVFVPF TGVDNHKKCV TFAAALIARE  300
DVESYCWALR HFKIAMGSIP RITVTDQDPA MKVAITKEFP ETRHRYCMWH IMTKVSDKVS  360
PDLARNEEFR RELNDVVWND SASSDYFEVA WKGVIEKYEL QENAWLKRMY EEREKWVPAC  420
FENVFMGRLL RTTSRSEAEN RIFRTNTNKH MCLSEFFIRL ESTIRKQRIT EADLIGACNA  480
QTPPFKTQLR IEQDAAAQYT LTVFYEVQDN ICAGCFDCRV RSVKHEGPVG TYVVEDEYNK  540
RFTVIVENGT NTTTCTCRMY TRIGLLCSHA YAVLIYERIE QTPPQHINPR WTKTALKNTK  600
GVGNDSLQHA RTSSTNSTKE STIINLLYRC LGLAQGDRSK LEPIRKTLED FEATWSERGR  660
ERGGLDKGKQ VIMESYCGVP EPVEVNVHPP PVSSNKGSGK RMRSAKEIAM KEQSKKKRTC  720
KTCGLATGHN SRSCPQK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-76	FAR1 family protein