PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019193941.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C3H

Protein Properties

Length: 410aa MW: 44528.6 Da PI: 8.6813

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019193941.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.8	2.7e-11	54	78	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C+++ rtG C++G++C+F+H+ XP_019193941.1 54 GEPDCSYYIRTGLCRFGASCRFNHP 78 6899********************8 PP
2	zf-CCCH	37.9	3e-12	100	124	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG Ck+G++CkF+H++ XP_019193941.1 100 QPECQYYLKTGACKFGATCKFHHPR 124 799********************96 PP
3	zf-CCCH	39.2	1.2e-12	148	170	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++rtG+Ck+G++CkF+H++ XP_019193941.1 148 ECPYYMRTGQCKFGSTCKFHHPQ 170 6********************97 PP
4	zf-CCCH	38.8	1.6e-12	299	325	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+f+++tG Ck+G+ CkF+H++ XP_019193941.1 299 PGQPECQFYMKTGDCKFGAVCKFHHPR 325 5789*********************96 PP
5	zf-CCCH	38.5	2e-12	345	371	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ XP_019193941.1 345 PGEPLCAFYSRYGICKFGPSCKFDHPM 371 589**********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence
MMDFEAAAGI SASMASVTEG PSSLSPPLAQ ETLWQLSLRS METMESGTYP VRDGEPDCSY 60 YIRTGLCRFG ASCRFNHPSN RKLAIAAARM KGEYPERVGQ PECQYYLKTG ACKFGATCKF 120 HHPRDKAGIA GRVALNVLGY PLRPNDIECP YYMRTGQCKF GSTCKFHHPQ PSNMMVPLRG 180 SPAYPPVHSP TTPGQLSYPL SRASFITNPR WQGPSSYTPL IVPQGVVSVP GFAYSGQLGS 240 VSSPESQQLT VGNSQAYGLS RSSEVANVGS QGMNPSYRAG TLPMGYYALQ RENVFPERPG 300 QPECQFYMKT GDCKFGAVCK FHHPRERLIP PPDSLLSPIG LPLRPGEPLC AFYSRYGICK 360 FGPSCKFDHP MGVFTYNISP SSTTNAPTVR HFLGSSSGTG TLTLSSEGAC

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence

MMDFEAAAGI SASMASVTEG PSSLSPPLAQ ETLWQLSLRS METMESGTYP VRDGEPDCSY  60
YIRTGLCRFG ASCRFNHPSN RKLAIAAARM KGEYPERVGQ PECQYYLKTG ACKFGATCKF  120
HHPRDKAGIA GRVALNVLGY PLRPNDIECP YYMRTGQCKF GSTCKFHHPQ PSNMMVPLRG  180
SPAYPPVHSP TTPGQLSYPL SRASFITNPR WQGPSSYTPL IVPQGVVSVP GFAYSGQLGS  240
VSSPESQQLT VGNSQAYGLS RSSEVANVGS QGMNPSYRAG TLPMGYYALQ RENVFPERPG  300
QPECQFYMKT GDCKFGAVCK FHHPRERLIP PPDSLLSPIG LPLRPGEPLC AFYSRYGICK  360
FGPSCKFDHP MGVFTYNISP SSTTNAPTVR HFLGSSSGTG TLTLSSEGAC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02830.1	1e-164	C3H family protein