PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194100.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GRAS
Protein Properties Length: 523aa    MW: 58917.5 Da    PI: 5.0998
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.98.9e-1351545232374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                     +e L++cA+a++++d  +a++ +++l++++s  g+p+qRl ay++e++ arla+s+s++ykal+++e +   s e ++++ l++ev+P++kf++l
  XP_019194100.1 154 KESLVACAKAIEDNDIPRAEWWMSELRTMVSVCGEPIQRLGAYMLEGMVARLASSGSSIYKALRCKEPT---SNELFSYMYLLYEVCPFFKFGYL 245
                     789*****************************************************************9...8999999999************* PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                      aN aI++a++ eervHiiDf+isqG+QW++L++aLa+Rp+gpp++ iTg+++++s   +   le +g+rL+ +Ae+++vpfef++ va +++d+
  XP_019194100.1 246 SANGAIVDAMKDEERVHIIDFQISQGTQWITLIHALAARPGGPPQICITGIDDSTSAhaRGGGLEIVGKRLSTLAESCKVPFEFRP-VAASCADV 339
                     *****************************************************9888889999***********************.7999**** PP

            GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                     ++e+L+v+pgEalaVn+ l lh+++de+v ++++rd+++++v+sl Pkvv++veqe+d+n+ +F+ rf+e+l+yy a+f+s+++ lpr+++eri+
  XP_019194100.1 340 KIEHLNVRPGEALAVNFPLVLHHMPDEDVGTQNHRDRLVRMVRSLFPKVVTLVEQESDTNKVPFFPRFVETLNYYLAVFESIDVALPRDHKERIN 434
                     *********************************************************************************************** PP

            GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     vE+++l+re+vn++aceg+er+erhe lekWr+r+++aGF+p+pls+++++++k+ll+++ +d y++ee++++l+lgW++r+Lv+ +aW+
  XP_019194100.1 435 VEQHCLAREVVNILACEGEERVERHEVLEKWRSRFSMAGFTPYPLSSSVNATIKTLLENYCKD-YTLEERDQALYLGWMNRALVASCAWQ 523
                     *************************************************************77.*************************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    
MQPSQNNMNM DGSRRFYNQP VQDLDNQFLA VGGAEFFAQT NDQYHDVMSY GYPGHSYTAD  60
SFLSDTSGIL QQDSQLYLAD VHHHSPEETY HSAASKSSLT DENDLKHKLR ELESAMFGHG  120
SEAYGSNMGN PDQMSSEAEK LEEMMGITSR RGLKESLVAC AKAIEDNDIP RAEWWMSELR  180
TMVSVCGEPI QRLGAYMLEG MVARLASSGS SIYKALRCKE PTSNELFSYM YLLYEVCPFF  240
KFGYLSANGA IVDAMKDEER VHIIDFQISQ GTQWITLIHA LAARPGGPPQ ICITGIDDST  300
SAHARGGGLE IVGKRLSTLA ESCKVPFEFR PVAASCADVK IEHLNVRPGE ALAVNFPLVL  360
HHMPDEDVGT QNHRDRLVRM VRSLFPKVVT LVEQESDTNK VPFFPRFVET LNYYLAVFES  420
IDVALPRDHK ERINVEQHCL AREVVNILAC EGEERVERHE VLEKWRSRFS MAGFTPYPLS  480
SSVNATIKTL LENYCKDYTL EERDQALYLG WMNRALVASC AWQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein