PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194299.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB

Protein Properties

Length: 488aa MW: 52346.5 Da PI: 7.4968

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194299.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.3	1.3e-16	27	74	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ r g+ R++k+c++rw ++l XP_019194299.1 27 KGPWTAAEDAILMEYVKKHGEGNWNAVQRNSGLMRCGKSCRLRWANHL 74 79******************************************9986 PP
2	Myb_DNA-binding	51.8	1.9e-16	80	123	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE+ l+v+++++lG++ W++ a+ ++ gRt++++k++w++ XP_019194299.1 80 KGAFSPEEERLIVELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 123 799*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 488 aa Download sequence
MAPDGGGMNN GGGASGRTGG ARQMLKKGPW TAAEDAILME YVKKHGEGNW NAVQRNSGLM 60 RCGKSCRLRW ANHLRPNLRK GAFSPEEERL IVELHAKLGN KWARMAAQLP GRTDNEIKNY 120 WNTRLKRRQR AGLPIYPQEI QPQNTYHHPN QILIQQTRSS RSSSPLSALL SAPPPPTHHL 180 PKPAPYNPPP SIYDHMFDSP AATMKSPPTT ALQGHNSHFK FFSAPPGGLA LTLAASSNKP 240 NQFSSPVTPP LPKHFNAPLP IPSLPFSAAL HPAMSSFSAV FAGPTGANLQ ERPSIQTPVP 300 ASTPTTSSGI TGSLYPAPSD DANDYEVLPG LPRSNSGLLE DLLHESHALT RDDVEKINKD 360 SSDGKGKQKS TSYEYEALLG NPTPPSVHEQ AVYSFGYEGE AASAKETNSP VDDDILSLLD 420 NFPLALPVPD WYDDGKGGGD LVNGGAFNTM QDGGGATGAV GNHKEESKSS STTTSEATLC 480 WNNMPCIS

Sequence ? help Back to Top

Protein Sequence Length: 488 aa Download sequence

MAPDGGGMNN GGGASGRTGG ARQMLKKGPW TAAEDAILME YVKKHGEGNW NAVQRNSGLM  60
RCGKSCRLRW ANHLRPNLRK GAFSPEEERL IVELHAKLGN KWARMAAQLP GRTDNEIKNY  120
WNTRLKRRQR AGLPIYPQEI QPQNTYHHPN QILIQQTRSS RSSSPLSALL SAPPPPTHHL  180
PKPAPYNPPP SIYDHMFDSP AATMKSPPTT ALQGHNSHFK FFSAPPGGLA LTLAASSNKP  240
NQFSSPVTPP LPKHFNAPLP IPSLPFSAAL HPAMSSFSAV FAGPTGANLQ ERPSIQTPVP  300
ASTPTTSSGI TGSLYPAPSD DANDYEVLPG LPRSNSGLLE DLLHESHALT RDDVEKINKD  360
SSDGKGKQKS TSYEYEALLG NPTPPSVHEQ AVYSFGYEGE AASAKETNSP VDDDILSLLD  420
NFPLALPVPD WYDDGKGGGD LVNGGAFNTM QDGGGATGAV GNHKEESKSS STTTSEATLC  480
WNNMPCIS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.1	2e-72	MYB family protein