PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_019194348.1

Organism

Ipomoea nil

Taxonomic ID

35883

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

MYB_related

Protein Properties

Length: 616aa MW: 67576 Da PI: 5.3706

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_019194348.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.1	9.5e-09	499	547	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r Rt ++k++w+++l XP_019194348.1 499 PWTLNEVIKLVEGVSRYGVGRWSEIKRLAFancPYRTSVDLKDKWRNLL 547 8**************************99999*************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 616 aa Download sequence
MESVIGVETD GEAKVEDSVV EAINSVSSCL PEETADPIVY KLVRVDGDGR LVPATDDEVM 60 AVEDLLEDDK CEVGQVIDAE QTVECNKIEA YHLGKTQFEN PQGQPFSEIH EADVVTFNVS 120 HKLLPDTDNV NAQGKATVPP LTSEYSTVDK SGSAEGCSAP SDAFSENNLL ASKAGASWKP 180 DFSKLKGEIC LENLTVKELH ETFKATFGRD TSVKDKQWLK RRISMGLSNS CDFSCTSFVI 240 EDSRVVKKVK ENIASVNGSI SKDPIVALPN INSGSSSGHD DKVESPANIT EGNIPNSTLE 300 GCIVSEGHNM EQTAAKRVRK PTKRYIEELS EVESRESSGK SMSSEKICGY KSTHPSNHVI 360 SIMKARPDGK PFIMRQDSLG GSGVQIPCVS RIRRGRPREN FMNLLPNGTD MAAELVKNVG 420 DTQIDQTDEV LKTSLSPGWI QQPLITSTEE GKHFPESKII EVGSNMEHEN MDLYEDHSDD 480 SMMAMPTPKG GMRRKHHRPW TLNEVIKLVE GVSRYGVGRW SEIKRLAFAN CPYRTSVDLK 540 DKWRNLLKAS NVQLPAEKGI QNSRKQAAIL IPTSILLRVR ELAEMQGHIS PSLNQSKFAG 600 LGSGGRSADE GRVGYL

Sequence ? help Back to Top

Protein Sequence Length: 616 aa Download sequence

MESVIGVETD GEAKVEDSVV EAINSVSSCL PEETADPIVY KLVRVDGDGR LVPATDDEVM  60
AVEDLLEDDK CEVGQVIDAE QTVECNKIEA YHLGKTQFEN PQGQPFSEIH EADVVTFNVS  120
HKLLPDTDNV NAQGKATVPP LTSEYSTVDK SGSAEGCSAP SDAFSENNLL ASKAGASWKP  180
DFSKLKGEIC LENLTVKELH ETFKATFGRD TSVKDKQWLK RRISMGLSNS CDFSCTSFVI  240
EDSRVVKKVK ENIASVNGSI SKDPIVALPN INSGSSSGHD DKVESPANIT EGNIPNSTLE  300
GCIVSEGHNM EQTAAKRVRK PTKRYIEELS EVESRESSGK SMSSEKICGY KSTHPSNHVI  360
SIMKARPDGK PFIMRQDSLG GSGVQIPCVS RIRRGRPREN FMNLLPNGTD MAAELVKNVG  420
DTQIDQTDEV LKTSLSPGWI QQPLITSTEE GKHFPESKII EVGSNMEHEN MDLYEDHSDD  480
SMMAMPTPKG GMRRKHHRPW TLNEVIKLVE GVSRYGVGRW SEIKRLAFAN CPYRTSVDLK  540
DKWRNLLKAS NVQLPAEKGI QNSRKQAAIL IPTSILLRVR ELAEMQGHIS PSLNQSKFAG  600
LGSGGRSADE GRVGYL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	1e-98	MYB_related family protein