PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194409.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 244aa    MW: 28356 Da    PI: 9.4318
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194409.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.6e-312675150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_019194409.1 26 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 75
                    79***********************************************8 PP
2K-box101.98.7e-34941904100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +++ s++ea+++ +qqe+akL+++i+++q++++++lGe+L+ L++keL++Le ++ek++ ++RskKnell+++ie +qk+e elq++n++Lr+k+
  XP_019194409.1  94 TNTGSVSEANTQFYQQESAKLRRQIREIQTSNKQILGESLGVLNHKELKNLEGKVEKAIGRVRSKKNELLFSEIELMQKREIELQNANMYLRAKI 188
                     334449****************************************************************************************9 PP

           K-box  99 ee 100
                      e
  XP_019194409.1 189 SE 190
                     76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MEFPNQALEE EESSHRKSGR GKIEIKRIEN TTNRQVTFCK RRNGLLKKAY ELSVLCDAEV  60
ALIVFSTRGR LYEYANNSVR ATIDRYKKHH SDSTNTGSVS EANTQFYQQE SAKLRRQIRE  120
IQTSNKQILG ESLGVLNHKE LKNLEGKVEK AIGRVRSKKN ELLFSEIELM QKREIELQNA  180
NMYLRAKISE FERAQQQMNL MPGSEYQETM TTSQTYDAHN FLPLTLLEPN QHYSRHDQTA  240
LQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-115MIKC_MADS family protein