PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_019194412.1
Organism
Ipomoea nil
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 836aa    MW: 92046.5 Da    PI: 6.4177
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_019194412.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.26.7e-191673457
                    -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_019194412.1 16 YVRYTPEQVEALERVYHECPKPSSMRRQQLIRECpilcNIEPKQIKVWFQNRRCREKQ 73
                    6789****************************************************97 PP
2START171.94.1e-541593672205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  ++   v+e+l+d++ W ++++++++++v+ ++  g+++l 
  XP_019194412.1 159 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPS-RVAEILKDRPSWFRDCRAVDVVNVLPTAngGTIELL 252
                     789*******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +R++  +++g++v++++S+ + q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+++++++++++lr+l+
  XP_019194412.1 253 YMQLYAPTTLAPaRDFWLLRFTSVMEDGSLVVCERSLGNVQNGPSmppVQNFVRAEMLPSGYLIRPCDGGGSIIHIVDHMNVEAWSVPEVLRPLY 347
                     ******************************************99988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++a+l+++++
  XP_019194412.1 348 ESSAVLAQKTTMAALRQLRQ 367
                     ****************9876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    
MSISCKDGKS AVDGKYVRYT PEQVEALERV YHECPKPSSM RRQQLIRECP ILCNIEPKQI  60
KVWFQNRRCR EKQRKEASRL QAVNRKLTAM NKLLMEENDR LQKQVSQLVY ENSYFRRQSQ  120
STGLATKDTS CESVVTSGQH QLTPQHPPRD ASPAGLLSIA EETLTEFLSK ATGTAVEWVQ  180
MPGMKPGPDS IGIIAISHGC TGVAARACGL VGLEPSRVAE ILKDRPSWFR DCRAVDVVNV  240
LPTANGGTIE LLYMQLYAPT TLAPARDFWL LRFTSVMEDG SLVVCERSLG NVQNGPSMPP  300
VQNFVRAEML PSGYLIRPCD GGGSIIHIVD HMNVEAWSVP EVLRPLYESS AVLAQKTTMA  360
ALRQLRQIAQ EVSQTNVTNW GRRPAALRAL SHRLSRGFNE ALNGFTDEGW SLLGNDGMDD  420
VTILVNSSPD KLMGLNLSYT NGFTPISNAV LCAKASMLLQ NVPPAVLLRF LREHRSEWAD  480
NNIEAYSAAA VKVGPCSLPG ARICNFGGQV TLPLAHTIEH EELLEVIKFE GIGHSPEEAM  540
MPRDMFLLQL CSGMDENAVG TCAELIFAPI DASFADDAPL LPSGFRIIPL DFGKESSSPN  600
RTLDLTSALE TGTAENKVLN DLNTNNGAAR SVMTIAFQFA FESHMQESVA AMARQYVRSI  660
ISSVQRVALA LSPSHLGSHG GLRLPLGTPE AHIIARWICQ SYRCYLGVEL LKSTGEGNES  720
ILKTLWNHSD AIVCCSAKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDHGRKSLCS  780
EFPQIMQQGF ACLQGGICMS SMGRPVSYER AVAWKVLNEE ESAHCICFMF INWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein